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Hi
If there are any errors with segmentation, on occasion, the code will run without any warnings or errors.
For example, if using vpt-plugin-cellpose2, I accidently used cellpose instead of cellpose2 in the config file.
The segmentation completed really quickly without any warnings or errors.
Having a look at the code, you could print a warning/error with more information out to the terminal/log file.
Hi
If there are any errors with segmentation, on occasion, the code will run without any warnings or errors.
For example, if using vpt-plugin-cellpose2, I accidently used cellpose instead of cellpose2 in the config file.
The segmentation completed really quickly without any warnings or errors.
Having a look at the code, you could print a warning/error with more information out to the terminal/log file.
The issue is at this code block:
vizgen-postprocessing/src/vpt/segmentation/segmentations_factory.py
Lines 29 to 33 in 166fb24
Cheers
Pradeep
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