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Ambiguous characters #111

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mjsull opened this issue Jan 15, 2020 · 0 comments
Open

Ambiguous characters #111

mjsull opened this issue Jan 15, 2020 · 0 comments

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@mjsull
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mjsull commented Jan 15, 2020

When downloading Escherichia from enterobase an ambiguous base is reported but download_enterobase runs to completion.
When you try to call variants using that database you get a dictionary key error (and the program crashes).
This is fixed by removing the offending Loci entry from the downloaded FASTAs and rebuilding with build_db.
It might make more sense either not to complete the creation of the database, or skip that locus in "call" as well.

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