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When downloading Escherichia from enterobase an ambiguous base is reported but download_enterobase runs to completion.
When you try to call variants using that database you get a dictionary key error (and the program crashes).
This is fixed by removing the offending Loci entry from the downloaded FASTAs and rebuilding with build_db.
It might make more sense either not to complete the creation of the database, or skip that locus in "call" as well.
The text was updated successfully, but these errors were encountered:
When downloading Escherichia from enterobase an ambiguous base is reported but download_enterobase runs to completion.
When you try to call variants using that database you get a dictionary key error (and the program crashes).
This is fixed by removing the offending Loci entry from the downloaded FASTAs and rebuilding with build_db.
It might make more sense either not to complete the creation of the database, or skip that locus in "call" as well.
The text was updated successfully, but these errors were encountered: