someting wrong in running ICAFixProcessingBatch.sh

[betsy1226]

I get an error when I do ./ICAFixProcessingBatch.sh
It said

hcp_fix: Done running FIX
Could not find a supported file with prefix "rfMRI_REST1_RL_hp2000.ica/filtered_func_data_clean"
hcp_fix: ERROR: '/usr/local/fsl/bin/immv' command failed with return code: 1
===> ERROR: Command returned with nonzero exit code

     script: hcp_fix

stopped at line: 462
call: $FSLDIR/bin/immv ${fmrihp}.ica/filtered_func_data_clean ${fmrihp}_clean
expanded call: /usr/local/fsl/bin/immv rfMRI_REST1_RL_hp2000.ica/filtered_func_data_clean rfMRI_REST1_RL_hp2000_clean
exit code: 1

I used Matlab2020b and chose FSL_FIX_MATLAB_MODE=1 since ubuntu20.04 supports 2020b or higher version.
I am confused that Fix only could be used in Matlab 2017? or there were other possible reasons?

[glasserm]

I would have a look at the FIX documentation and some of the internal FIX logs.

[betsy1226]

In the file rfMRI_REST1_RL_hp2000.ica, there was a txt named "logMatlab.txt"
It said

rfMRI_REST1_RL_hp2000.ica/
67 1
Error Time: 05/22/2024 22:23:19
'aryule' undefined near line 11 column 22

rfMRI_REST1_RL_hp2000.ica/
67 1
Error Time: 05/22/2024 22:28:25
'aryule' undefined near line 11 column 22

[glasserm]

Looks like you are missing the Matlab signal processing toolbox. You could run compiled matlab instead.

[betsy1226]

I had tried matlab runtime 2017, but there was something wrong in lib in Ubuntu 20.04.

[mharms]

That sounds like your installed version of Matlab is missing a Toolbox that ‘fix’ expects to exist. Possibly the Signal Processing Toolbox?

…

-- Michael Harms, Ph.D. ----------------------------------------------------------- Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: ***@***.*** From: betsy1226 ***@***.***> Reply-To: Washington-University/HCPpipelines ***@***.***> Date: Wednesday, May 22, 2024 at 10:15 AM To: Washington-University/HCPpipelines ***@***.***> Cc: Subscribed ***@***.***> Subject: Re: [Washington-University/HCPpipelines] someting wrong in running ICAFixProcessingBatch.sh (Discussion #293) * External Email - Caution * In the file rfMRI_REST1_RL_hp2000.ica, there was a txt named "logMatlab.txt" It said rfMRI_REST1_RL_hp2000.ica/ 67 1 Error Time: 05/22/2024 22:23:19 'aryule' undefined near line 11 column 22 rfMRI_REST1_RL_hp2000.ica/ 67 1 Error Time: 05/22/2024 22:28:25 'aryule' undefined near line 11 column 22 — Reply to this email directly, view it on GitHub<#293 (reply in thread)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AA5TABR2UR7BI5MIW76NKTLZDSZATAVCNFSM6AAAAABID3BMMOVHI2DSMVQWIX3LMV43SRDJONRXK43TNFXW4Q3PNVWWK3TUHM4TKMRTGQ4TE>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

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[betsy1226]

Thanks for your suggestion. I tested the Signal Processing Toolbox and function 'aryule'. Signal Processing Toolbox seemed to work well. I also tried to work on Matlab2022b, also failed.