@@ -95,22 +95,22 @@ remotes::install_github("Yunuuuu/ggalign")
| User Interface |
Declarative |
Declarative |
+ Declarative+Functional |
Functional |
- Declarative |
| Plot System |
ggplot2 (Advanced plot system built on grid system) |
Matplotlib |
- grid |
ggplot2 (Advanced plot system built on grid system) |
+ grid |
| Focus |
Composable Visualization |
Composable Visualization |
+ Composable Visualization |
Heatmap |
- tree Data |
| StackLayout |
@@ -123,18 +123,11 @@ remotes::install_github("Yunuuuu/ggalign")
QuadLayout |
✅ |
✅ |
+ ✅ |
Heatmap Only (discrete variables) |
- Cannot arrange multiple QuadLayouts |
| CircleLayout |
- Arc with angle >= 90 |
- ❌ |
- ❌ |
- ✅ |
-
-
- | CrossLayout |
✅ |
❌ |
❌ |
@@ -149,60 +142,60 @@ remotes::install_github("Yunuuuu/ggalign")
✅ |
- | One-to-Many |
+ One-to-Many/Many-to-One |
✅ |
❌ |
❌ |
❌ |
- | Many-to-One |
+ Many-to-Many |
✅ |
❌ |
❌ |
❌ |
- | Cross |
+ Crosswise |
✅ |
❌ |
❌ |
❌ |
- | Ease of Use |
- Easy for ggplot2 users |
- Easy for python user |
- Easy for for grid user |
- Easy for ggplot2 users |
+ Annotate observations |
+ ✅ |
+ ❌ |
+ ❌ |
+ ✅ |
| Fully Compatible with ggplot2 |
✅ |
❌ |
+ ✅ |
❌ |
- Limited Geometric layers support in CircleLayout |
```
-------------------------------------------------------------------------------
-| Specification | `ggalign` | `marsilea` | `ComplexHeatmap` | `ggtree+aplot` |
-| -------------------------------------------- | ----------------------------------------------------- | ----------------- | ------------------------------------------------------------------------- | -------------------------------------------------- |
-| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
-| **Plot Type** | Wide variety, provided by ggplot2 | Many, but limited | Many, but limited | Limited Geometric layers support in `CircleLayout` |
-| **Reorder observations** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ✅ |
-| **Group observations into different panels** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ❌ |
-| **Clustering algorithm** | Kmeans,Hierarchical Clustering and arbitary algorithm | ❌ | Kmeans,Hierarchical Clustering, but can provide clustering group directly | ❌ |
-| **Legends Creation** | Automatic | Manual | Limited automatic, requires manual add | Automatic |
-| **Legends Position** | Anywhere, can be controlled for a single plot | ? | Four sides, can only be placed on one side at a time | Anywhere |
-| **Scientific Color Palettes** | Many | Limited | Limited | Many |
-| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only | `hclust` only (Cannot be used in StackLayout) | Tree from Both `hclust` or `ape` |
-| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
-| **3D Heatmap** | ✅ | ❌ | ✅ | ❌ |
-| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
-| **UpSet plot** | ✅ | ✅ | ✅ | ❌ |
+| Specification | `ggalign` | `marsilea` | `aplot` | `ComplexHeatmap` |
+| -------------------------------------------- | ----------------------------------------------------- | ----------------- | ----------------------------------- | ------------------------------------------------------------------------- |
+| **Data input** | Various, and can be easily extended | fixed | Various, and can be easily extended | fixed |
+| **Plot Type** | Wide variety, provided by ggplot2 | Many, but limited | ✅ | Many, but limited |
+| **Reorder observations** | ✅ | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) |
+| **Group observations into different panels** | ✅ | ✅ | ❌ | Heatmap Only (Cannot be used in Stack Layout) |
+| **Clustering algorithm** | Kmeans,Hierarchical Clustering and arbitary algorithm | ❌ | ❌ | Kmeans,Hierarchical Clustering, but can provide clustering group directly |
+| **Legends Creation** | Automatic | Manual | Automatic | Limited automatic, requires manual add |
+| **Legends Position** | Anywhere, can be controlled for a single plot | ? | Anywhere | Four sides, can only be placed on one side at a time |
+| **Scientific Color Palettes** | Many | Limited | Many | Limited |
+| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only | Tree from Both `hclust` or `ape` | `hclust` only (Cannot be used in StackLayout) |
+| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
+| **3D Heatmap** | ✅ | ❌ | ❌ | ✅ |
+| **Oncoplot** | ✅ | ✅ | ❌ | ✅ |
+| **UpSet plot** | ✅ | ✅ | ❌ | ✅ |
## Acknowledgements
I would like to express my sincere gratitude to the contributors of the
diff --git a/README.md b/README.md
index 1702d4bb..8adc50ad 100644
--- a/README.md
+++ b/README.md
@@ -73,8 +73,8 @@ remotes::install_github("Yunuuuu/ggalign")