diff --git a/README.Rmd b/README.Rmd
index 05624ffe..a80a5fb2 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -81,7 +81,7 @@ remotes::install_github("Yunuuuu/ggalign")
ggalign |
marsilea |
ComplexHeatmap |
- ggtree |
+ ggtree+aplot |
@@ -113,28 +113,28 @@ remotes::install_github("Yunuuuu/ggalign")
| tree Data |
- | Stack Layout |
+ StackLayout |
+ ✅ |
✅ |
✅ |
✅ |
- ❌ |
- | Quad Layout |
+ QuadLayout |
✅ |
✅ |
Heatmap Only (discrete variables) |
- ❌ |
+ Cannot arrange multiple QuadLayouts |
- | Circle Layout |
- ✅ |
+ CircleLayout |
+ Arc with angle >= 90 |
❌ |
❌ |
✅ |
- | Cross Layout |
+ CrossLayout |
✅ |
❌ |
❌ |
@@ -181,27 +181,27 @@ remotes::install_github("Yunuuuu/ggalign")
✅ |
❌ |
❌ |
- Limited Geometric layers support |
+ Limited Geometric layers support in CircleLayout |
-------------------------------------------------------------------------------
-| Specification | `ggalign` | `marsilea` | `ComplexHeatmap` | `ggtree` |
-| -------------------------------------------- | ----------------------------------------------------- | ----------------- | ------------------------------------------------------------------------- | ----------------------------------- |
-| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
-| **Plot Type** | Wide variety, provided by ggplot2 | Many, but limited | Many, but limited | Limited Geometric layers support |
-| **Reorder observations** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ✅ |
-| **Group observations into different panels** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ❌ |
-| **Clustering algorithm** | Kmeans,Hierarchical Clustering and arbitary algorithm | ❌ | Kmeans,Hierarchical Clustering, but can provide clustering group directly | ❌ |
-| **Legends Creation** | Automatic | Manual | Limited automatic, requires manual add | Automatic |
-| **Legends Position** | Anywhere, can be controlled for a single plot | ? | Four sides, can only be placed on one side at a time | Anywhere |
-| **Scientific Color Palettes** | Many | Limited | Limited | Many |
-| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only | `hclust` only (Cannot be used in Stack Layout) | Tree from Both `hclust` or `ape` |
-| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
-| **3D Heatmap** | ✅ | ❌ | ✅ | ❌ |
-| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
-| **UpSet plot** | ✅ | ✅ | ✅ | ❌ |
+| Specification | `ggalign` | `marsilea` | `ComplexHeatmap` | `ggtree+aplot` |
+| -------------------------------------------- | ----------------------------------------------------- | ----------------- | ------------------------------------------------------------------------- | -------------------------------------------------- |
+| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
+| **Plot Type** | Wide variety, provided by ggplot2 | Many, but limited | Many, but limited | Limited Geometric layers support in `CircleLayout` |
+| **Reorder observations** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ✅ |
+| **Group observations into different panels** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ❌ |
+| **Clustering algorithm** | Kmeans,Hierarchical Clustering and arbitary algorithm | ❌ | Kmeans,Hierarchical Clustering, but can provide clustering group directly | ❌ |
+| **Legends Creation** | Automatic | Manual | Limited automatic, requires manual add | Automatic |
+| **Legends Position** | Anywhere, can be controlled for a single plot | ? | Four sides, can only be placed on one side at a time | Anywhere |
+| **Scientific Color Palettes** | Many | Limited | Limited | Many |
+| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only | `hclust` only (Cannot be used in StackLayout) | Tree from Both `hclust` or `ape` |
+| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
+| **3D Heatmap** | ✅ | ❌ | ✅ | ❌ |
+| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
+| **UpSet plot** | ✅ | ✅ | ✅ | ❌ |
## Acknowledgements
I would like to express my sincere gratitude to the contributors of the
diff --git a/README.md b/README.md
index 74c917b9..d8272cec 100644
--- a/README.md
+++ b/README.md
@@ -83,7 +83,7 @@ remotes::install_github("Yunuuuu/ggalign")
ComplexHeatmap
-ggtree
+ggtree+aplot
|
@@ -158,7 +158,7 @@ tree Data
|
-Stack Layout
+StackLayout
|
✅
@@ -170,12 +170,12 @@ tree Data
✅
|
-❌
+✅
|
|
-Quad Layout
+QuadLayout
|
✅
@@ -187,15 +187,15 @@ tree Data
Heatmap Only (discrete variables)
|
-❌
+Cannot arrange multiple QuadLayouts
|
|
-Circle Layout
+CircleLayout
|
-✅
+Arc with angle \>= 90
|
❌
@@ -209,7 +209,7 @@ Heatmap Only (discrete variables)
|
|
-Cross Layout
+CrossLayout
|
✅
@@ -326,7 +326,7 @@ Easy for ggplot2 users
❌
|
-Limited Geometric layers support
+Limited Geometric layers support in CircleLayout
|
@@ -334,21 +334,21 @@ Limited Geometric layers support
------------------------------------------------------------------------
-| Specification | `ggalign` | `marsilea` | `ComplexHeatmap` | `ggtree` |
-|----------------------------------------------|-------------------------------------------------------|-------------------|---------------------------------------------------------------------------|-------------------------------------|
-| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
-| **Plot Type** | Wide variety, provided by ggplot2 | Many, but limited | Many, but limited | Limited Geometric layers support |
-| **Reorder observations** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ✅ |
-| **Group observations into different panels** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ❌ |
-| **Clustering algorithm** | Kmeans,Hierarchical Clustering and arbitary algorithm | ❌ | Kmeans,Hierarchical Clustering, but can provide clustering group directly | ❌ |
-| **Legends Creation** | Automatic | Manual | Limited automatic, requires manual add | Automatic |
-| **Legends Position** | Anywhere, can be controlled for a single plot | ? | Four sides, can only be placed on one side at a time | Anywhere |
-| **Scientific Color Palettes** | Many | Limited | Limited | Many |
-| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only | `hclust` only (Cannot be used in Stack Layout) | Tree from Both `hclust` or `ape` |
-| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
-| **3D Heatmap** | ✅ | ❌ | ✅ | ❌ |
-| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
-| **UpSet plot** | ✅ | ✅ | ✅ | ❌ |
+| Specification | `ggalign` | `marsilea` | `ComplexHeatmap` | `ggtree+aplot` |
+|----------------------------------------------|-------------------------------------------------------|-------------------|---------------------------------------------------------------------------|----------------------------------------------------|
+| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
+| **Plot Type** | Wide variety, provided by ggplot2 | Many, but limited | Many, but limited | Limited Geometric layers support in `CircleLayout` |
+| **Reorder observations** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ✅ |
+| **Group observations into different panels** | ✅ | ✅ | Heatmap Only (Cannot be used in Stack Layout) | ❌ |
+| **Clustering algorithm** | Kmeans,Hierarchical Clustering and arbitary algorithm | ❌ | Kmeans,Hierarchical Clustering, but can provide clustering group directly | ❌ |
+| **Legends Creation** | Automatic | Manual | Limited automatic, requires manual add | Automatic |
+| **Legends Position** | Anywhere, can be controlled for a single plot | ? | Four sides, can only be placed on one side at a time | Anywhere |
+| **Scientific Color Palettes** | Many | Limited | Limited | Many |
+| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only | `hclust` only (Cannot be used in StackLayout) | Tree from Both `hclust` or `ape` |
+| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
+| **3D Heatmap** | ✅ | ❌ | ✅ | ❌ |
+| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
+| **UpSet plot** | ✅ | ✅ | ✅ | ❌ |
## Acknowledgements