integration.yml

name: Integration tests

on:
  pull_request:
  push:
    branches:
    - 'main'
    - '*-release'

env:
  DATABASE_NAME: TestDatabase
  DATABASE_USERNAME: TestUsername
  DATABASE_PASSWORD: TestPassword
  BUCKET_URL: https://ace-minio-1.loris.ca:9000
  BUCKET_NAME: loris-rb-data
  BUCKET_ACCESS_KEY: lorisadmin-ro
  BUCKET_SECRET_KEY: Tn=qP3LupmXnMuc

jobs:
  docker:
    name: Docker
    runs-on: ubuntu-latest
    steps:
    - name: Check out LORIS-MRI
      uses: actions/checkout@v4

    - name: Clone the LORIS core repository
      run: git clone https://github.com/aces/Loris.git ./test/Loris

    - name: Overwrite Raisinbread SQL files
      run: cp -f ./test/RB_SQL/*.sql ./test/Loris/raisinbread/RB_files/

    - name: Set up Docker Buildx
      uses: docker/setup-buildx-action@v3

    - name: Build Docker database image
      uses: docker/build-push-action@v6
      with:
        context: .
        file: ./test/db.Dockerfile
        build-args: |
          DATABASE_NAME=${{ env.DATABASE_NAME }}
          DATABASE_USER=${{ env.DATABASE_USERNAME }}
          DATABASE_PASS=${{ env.DATABASE_PASSWORD }}
        tags: loris-db
        load: true
        cache-from: type=gha,scope=loris-db
        cache-to: type=gha,scope=loris-db

    - name: Build Docker MRI image
      uses: docker/build-push-action@v6
      with:
        context: .
        file: ./test/mri.Dockerfile
        build-args: |
          DATABASE_NAME=${{ env.DATABASE_NAME }}
          DATABASE_USER=${{ env.DATABASE_USERNAME }}
          DATABASE_PASS=${{ env.DATABASE_PASSWORD }}
          BUCKET_URL=${{ env.BUCKET_URL }}
          BUCKET_NAME=${{ env.BUCKET_NAME }}
          BUCKET_ACCESS_KEY=${{ env.BUCKET_ACCESS_KEY }}
          BUCKET_SECRET_KEY=${{ env.BUCKET_SECRET_KEY }}
        tags: loris-mri
        load: true
        cache-from: type=gha,scope=loris-mri
        cache-to: type=gha,mode=max,scope=loris-mri

    # TODO: Move as much as possible of this in the MRI dockerfile
    - name: Mount imaging files S3 bucket
      run: |
        sudo apt-get update
        sudo apt-get install -y s3fs fuse kmod
        sudo modprobe fuse
        sudo mkdir /data-imaging
        touch .passwd-s3fs
        chmod 600 .passwd-s3fs
        echo ${{ env.BUCKET_ACCESS_KEY }}:${{ env.BUCKET_SECRET_KEY }} > .passwd-s3fs
        sudo s3fs ${{ env.BUCKET_NAME }} /data-imaging -o passwd_file=.passwd-s3fs -o url=${{ env.BUCKET_URL }} -o use_path_request_style -o allow_other
        ls /data-imaging

    - name: Run integration tests
      run: docker compose --file ./test/docker-compose.yml run mri pytest -s python/tests/integration