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FSL Melodic: specify tool config for fsl_sub #20

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glatard opened this issue Jan 27, 2016 · 0 comments
Open

FSL Melodic: specify tool config for fsl_sub #20

glatard opened this issue Jan 27, 2016 · 0 comments
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@glatard
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glatard commented Jan 27, 2016

Currently, fsl_sub doesn't specify a tool config when it submits tasks to CBRAIN. The Bourreau picks the first tool_config it finds, which has several issues:

  • the new task may be submitted to a different cluster;
  • the new task may be submitted with a different version of FSL.
    So, at the moment, FSL melodic (group analyses) only work when there is only a single tool config for fsl_sub, with the same version as FSL melodic, and on the same cluster.

The solution to allow for more fsl_sub tool_configs is to:

  • choose the proper tool_config_id in fsl_melodic (bourreau-side). The tool config should be on the same bourreau, with the same FSL version (fsl_sub currently use different versions than FSL, but this should be fixed in fsl_sub's Boutiques descriptor).
  • pass this tool config id to fsl_sub, e.g. through an environment variable.
  • make fsl_sub write the tool_config_id in its job submission to CBRAIN.
@glatard glatard self-assigned this Jan 27, 2016
@glatard glatard added this to the "Big datasets" FSL Melodic release milestone Jan 27, 2016
@glatard glatard modified the milestones: Release 1.1, Release 1.0 Feb 9, 2016
@glatard glatard modified the milestone: Release 1.2 Mar 14, 2016
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