From f50c912c01937edd3b429f34a29b23ce5db55b52 Mon Sep 17 00:00:00 2001
From: Gert Hulselmans <gert.hulselmans@kuleuven.be>
Date: Mon, 5 Feb 2024 17:18:18 +0100
Subject: [PATCH] Add "dprint" configuration for automatic formatting of TOML
 files.

Add "dprint" configuration for automatic formatting of TOML files.
---
 dprint.json    |  8 ++++++++
 pyproject.toml | 37 ++++++++++++++++++++-----------------
 2 files changed, 28 insertions(+), 17 deletions(-)
 create mode 100644 dprint.json

diff --git a/dprint.json b/dprint.json
new file mode 100644
index 0000000..94a1fa2
--- /dev/null
+++ b/dprint.json
@@ -0,0 +1,8 @@
+{
+  "toml": {
+  },
+  "excludes": [],
+  "plugins": [
+    "https://plugins.dprint.dev/toml-0.6.0.wasm",
+  ]
+}
diff --git a/pyproject.toml b/pyproject.toml
index cfa6ce9..061d270 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,20 +6,20 @@ build-backend = "maturin"
 name = "scatac_fragment_tools"
 requires-python = ">=3.8"
 classifiers = [
-    "Programming Language :: Rust",
-    "Programming Language :: Python :: Implementation :: CPython",
-    "Programming Language :: Python :: Implementation :: PyPy",
+  "Programming Language :: Rust",
+  "Programming Language :: Python :: Implementation :: CPython",
+  "Programming Language :: Python :: Implementation :: PyPy",
 ]
 dynamic = ["version"]
 dependencies = [
-    "numpy",
-    "pyBigWig",
-    "pybigtools",
-    "polars",
-    "pyarrow",
-    "numba",
-    "rich-argparse",
-    "joblib"
+  "numpy",
+  "pyBigWig",
+  "pybigtools",
+  "polars",
+  "pyarrow",
+  "numba",
+  "rich-argparse",
+  "joblib",
 ]
 
 [tool.maturin]
@@ -28,10 +28,10 @@ module-name = "scatac_fragment_tools._rust_scatac_fragment_tools"
 
 [project.optional-dependencies]
 development = [
-    "mypy",
-    "black",
-    "ruff",
-    "pytest",
+  "mypy",
+  "black",
+  "ruff",
+  "pytest",
 ]
 
 [project.scripts]
@@ -40,7 +40,7 @@ scatac_fragment_tools = "scatac_fragment_tools.cli.main:main"
 [tool.ruff]
 target-version = "py38"
 line-length = 88
-#fix = true
+# fix = true
 
 select = [
   "E", # pycodestyle
@@ -88,6 +88,9 @@ ignore = [
   "D101",
 ]
 
+[tool.ruff.format]
+docstring-code-format = true
+
 [tool.ruff.pycodestyle]
 max-doc-length = 88
 
@@ -97,6 +100,6 @@ ban-relative-imports = "all"
 [tool.pytest.ini_options]
 minversion = "6.0"
 testpaths = [
-    "tests",
+  "tests",
 ]
 addopts = "--verbose"