-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathexample_gff_annotation.gff
7 lines (7 loc) · 2.5 KB
/
example_gff_annotation.gff
1
2
3
4
5
6
7
##sequence-region AL123456.3 1 4411532
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83332
AL123456.3 EMBL region 1 4411532 . + . ID=AL123456.3:1..4411532;Dbxref=taxon:83332;gbkey=Src;mol_type=genomic DNA;strain=H37Rv;type-material=type strain of Mycobacterium tuberculosis
AL123456.3 EMBL gene 1 1524 . + . ID=gene-Rv0001;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=Rv0001
AL123456.3 EMBL CDS 1 1524 . + 0 ID=cds-CCP42723.1;Parent=gene-Rv0001;Dbxref=EnsemblGenomes-Gn:Rv0001,EnsemblGenomes-Tr:CCP42723,GOA:P9WNW3,InterPro:IPR001957,InterPro:IPR003593,InterPro:IPR010921,InterPro:IPR013159,InterPro:IPR013317,InterPro:IPR018312,InterPro:IPR020591,InterPro:IPR027417,NCBI_GP:CCP42723.1;Name=CCP42723.1;Note=Rv0001%2C (MT0001%2C MTV029.01%2C P49993)%2C len: 507 aa. dnaA%2C chromosomal replication initiator protein (see citations below)%2C equivalent to other Mycobacterial chromosomal replication initiator proteins. Also highly similar to others except in N-terminus e.g. Q9ZH75|DNAA_STRCH chromosomal replication initiator protein from Streptomyces chrysomallus (624 aa). Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS01008 DnaA protein signature. Belongs to the DnaA family. Note that the first base of this gene has been taken as base 1 of the Mycobacterium tuberculosis H37Rv genomic sequence.;experiment=EXISTENCE: identified in proteomics study;gbkey=CDS;gene=dnaA;inference=protein motif:PROSITE:PS01008;locus_tag=Rv0001;product=Chromosomal replication initiator protein DnaA;protein_id=CCP42723.1;transl_table=11
AL123456.3 EMBL gene 2052 3260 . + . ID=gene-Rv0002;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=Rv0002
AL123456.3 EMBL CDS 2052 3260 . + 0 ID=cds-CCP42724.1;Parent=gene-Rv0002;Dbxref=EnsemblGenomes-Gn:Rv0002,EnsemblGenomes-Tr:CCP42724,GOA:P9WNU1,InterPro:IPR001001,InterPro:IPR022634,InterPro:IPR022635,InterPro:IPR022637,PDB:3P16,PDB:3RB9,NCBI_GP:CCP42724.1;Name=CCP42724.1;Note=Rv0002%2C (MTV029.02%2C MTCY10H4.0)%2C len: 402 aa. DnaN%2CDNA polymerase III (beta chain) (see citations below)%2Cequivalent to other Mycobacterial DNA polymerases III beta chain. Also highly similar to others e.g. P27903|DP3B_STRCO DNA polymerase III beta chain from Streptomyces coelicolor (376 aa). Overlaps and extends CDS in neighbouring cosmid MTCY10H4.01.;experiment=EXISTENCE: identified in proteomics study;gbkey=CDS;gene=dnaN;locus_tag=Rv0002;product=DNA polymerase III (beta chain) DnaN (DNA nucleotidyltransferase);protein_id=CCP42724.1;transl_table=11