From 4858b56518ae31733e51356a20a0b38bf48f21e0 Mon Sep 17 00:00:00 2001 From: aguerrerolopez Date: Tue, 9 Jul 2024 15:43:38 +0200 Subject: [PATCH] modified portoflio to be openacess --- _pages/portfolio.md | 58 +++++++++++++++++++++++++++ _portfolio/cuco_db.md | 17 ++++++++ _portfolio/eod-connector.md | 1 + _portfolio/favae.md | 1 + _portfolio/gpu_mon.md | 1 + _portfolio/ksshiba.md | 1 + _portfolio/manually_transcriptions.md | 1 + _portfolio/ppms_xai.md | 1 + _portfolio/pvpc.md | 1 + _portfolio/snntorch_intro.md | 11 +++++ _portfolio/sshiba-maldi.md | 1 + _portfolio/trains_cnn.md | 1 + 12 files changed, 95 insertions(+) create mode 100644 _pages/portfolio.md create mode 100644 _portfolio/cuco_db.md create mode 100644 _portfolio/snntorch_intro.md diff --git a/_pages/portfolio.md b/_pages/portfolio.md new file mode 100644 index 000000000000..0344a93ead3c --- /dev/null +++ b/_pages/portfolio.md @@ -0,0 +1,58 @@ +--- +layout: archive +title: "OpenAccess" +permalink: /openaccess/ +author_profile: true +--- + + +{% include base_path %} + +{% assign categories_order = "Datasets,Software,Teaching,Misc" | split: "," %} + +{% for category in categories_order %} + {% assign publications_in_category = site.portfolio | where: "category", category %} + + {% if publications_in_category.size > 0 %} +

{{ category | capitalize }} +

+
+ {% for post in publications_in_category %} + {% include archive-single.html %} + {% endfor %} +
+ {% endif %} +{% endfor %} + + + + + diff --git a/_portfolio/cuco_db.md b/_portfolio/cuco_db.md new file mode 100644 index 000000000000..19ae1f321dac --- /dev/null +++ b/_portfolio/cuco_db.md @@ -0,0 +1,17 @@ +--- +title: "CUCO Database: A voice and speech corpus of patients who underwent upper airway surgery in pre- and post-operative states" +excerpt: "Our dataset includes 3,800 audio files, averaging 35.51 ± 5.91 recordings per patient, covering surgeries like Tonsillectomy, Functional Endoscopic Sinus Surgery, and Septoplasty." +collection: portfolio +category: "Datasets" +--- + +## CUCO Database: A voice and speech corpus of patients who underwent upper airway surgery in pre- and post-operative states +We have developed a comprehensive voice and speech corpus featuring 107 Spanish Castilian speakers, including both control participants and patients who underwent upper airway surgeries such as Tonsillectomy, Functional Endoscopic Sinus Surgery, and Septoplasty. + +Our dataset contains 3,800 audio files, averaging 35.51 ± 5.91 recordings per patient. This resource is designed to facilitate systematic investigations into the effects of upper respiratory tract surgery on voice and speech. Previous studies using this corpus have demonstrated no significant changes in key acoustic parameters for sustained vowel phonation, aligning with our initial hypotheses. However, further research into speech recordings, particularly nasalised segments, is encouraged. + +Additionally, this dataset is instrumental in exploring the impact of upper airway surgery on speaker recognition and identification methods, as well as in testing anti-spoofing methodologies to enhance robustness. + +🔗 Read our paper: [Scientific Data - Paper Link](https://www.nature.com/articles/s41597-024-03540-5#citeas) +📂 Access the dataset: [Zenodo Dataset](https://zenodo.org/records/11654546) +💻 Github Repository: [CUCO Database on Github](https://github.com/BYO-UPM/CUCO_Database) diff --git a/_portfolio/eod-connector.md b/_portfolio/eod-connector.md index 50cc166cb57d..37d01fd36d70 100644 --- a/_portfolio/eod-connector.md +++ b/_portfolio/eod-connector.md @@ -2,6 +2,7 @@ title: "Matlab library: EODConnector" excerpt: "A library to retrieve any stock market data from [EOD Historical Data](https://eodhistoricaldata.com) market datafeed API." collection: portfolio +category: "Software" --- ## EODConnector diff --git a/_portfolio/favae.md b/_portfolio/favae.md index 34765cfa12a6..81317e71b5bf 100644 --- a/_portfolio/favae.md +++ b/_portfolio/favae.md @@ -2,6 +2,7 @@ title: "Paper python code: Factor Analysis Variational AutoEncoder" excerpt: "Python code to [Multi-view hierarchical Variational AutoEncoders with Factor Analysis latent space](https://arxiv.org/abs/2207.09185) paper." collection: portfolio +category: "Software" --- ## Factor Analysis Variational AutoEncoder diff --git a/_portfolio/gpu_mon.md b/_portfolio/gpu_mon.md index 6a62cebfc49e..70692e4bd8da 100644 --- a/_portfolio/gpu_mon.md +++ b/_portfolio/gpu_mon.md @@ -2,6 +2,7 @@ title: "GPU monitoring" excerpt: "Bash simple script to monitorize the use of GPU by the colleagues of the department" collection: portfolio +category: "Software" --- ## GPU monitoring diff --git a/_portfolio/ksshiba.md b/_portfolio/ksshiba.md index 0264d125db36..3bdb1607695d 100644 --- a/_portfolio/ksshiba.md +++ b/_portfolio/ksshiba.md @@ -2,6 +2,7 @@ title: "Paper python code: Bayesian Sparse Factor Analysis with Kernelized Observations" excerpt: "Python code to [Bayesian Sparse Factor Analysis with Kernelized Observations](https://doi.org/10.1016/j.neucom.2022.03.024) paper." collection: portfolio +category: "Software" --- ## Bayesian Sparse Factor Analysis with Kernelized Observations diff --git a/_portfolio/manually_transcriptions.md b/_portfolio/manually_transcriptions.md index a43a259a2568..851d915d5e34 100644 --- a/_portfolio/manually_transcriptions.md +++ b/_portfolio/manually_transcriptions.md @@ -2,6 +2,7 @@ title: "Manual Transcription Editor" excerpt: "I have developed a powerful and user-friendly tool designed to manually correct automatic transcriptions of audio files. This tool is particularly useful for refining transcriptions made by Whisper, ensuring high accuracy and quality." collection: portfolio +category: "Software" --- # 🛠️ Manual Transcription Editor diff --git a/_portfolio/ppms_xai.md b/_portfolio/ppms_xai.md index df7e08fa0d29..8bc47b07ac04 100644 --- a/_portfolio/ppms_xai.md +++ b/_portfolio/ppms_xai.md @@ -2,6 +2,7 @@ title: "Paper python code: Exploring the Power of PPG Matrix for Atrial Fibrillation Detection with Integrated Explainability" excerpt: "Python code to [Exploring the Power of PPG Matrix for Atrial Fibrillation Detection with Integrated Explainability](http://dx.doi.org/10.2139/ssrn.4514512) paper." collection: portfolio +category: "Software" --- ## Exploring the Power of PPG Matrix for Atrial Fibrillation Detection with Integrated Explainability diff --git a/_portfolio/pvpc.md b/_portfolio/pvpc.md index 69fa42077ed6..6afbfbf8bb9a 100644 --- a/_portfolio/pvpc.md +++ b/_portfolio/pvpc.md @@ -2,6 +2,7 @@ title: "Python script: PVPC reader" excerpt: "An unfinished project of reading public spanish electrical prices and do some ML" collection: portfolio +category: "Software" --- ## PVPC reader diff --git a/_portfolio/snntorch_intro.md b/_portfolio/snntorch_intro.md new file mode 100644 index 000000000000..5c2dde30fe61 --- /dev/null +++ b/_portfolio/snntorch_intro.md @@ -0,0 +1,11 @@ +--- +title: "Introduction to SNN: from theory to Pytorch" +excerpt: "Slides of the BioInspired Learning course at MUIT UPM" +collection: portfolio +category: "Teaching" +--- + +## Introduction to SNN: from theory to Pytorch +Slides of the introduction to SNNs given at the Master program MUIT at the UPM 2023/2024. + +[Introduction to SNN: from theory to Pytorch](https://aguerrerolopez.github.io/portfolio/teaching/bio-inspired-learning/snntorch_intro.ipynb) diff --git a/_portfolio/sshiba-maldi.md b/_portfolio/sshiba-maldi.md index 0a05a95ab1c5..e264c3ce5d9b 100644 --- a/_portfolio/sshiba-maldi.md +++ b/_portfolio/sshiba-maldi.md @@ -2,6 +2,7 @@ title: "Paper python code: Automatic antibiotic resistance prediction in Klebsiella pneumoniae based on MALDI-TOF mass spectra" excerpt: "KSSHIBA model tailored for the MALDI-TOF data to predict simultanously from which hospital is the data coming from and the resistance mechanism of every bacteria to ESBL or CP." collection: portfolio +category: "Software" --- ## KSSHIBA tailored for MALDI-TOF data diff --git a/_portfolio/trains_cnn.md b/_portfolio/trains_cnn.md index 5c91687e39cb..2b41b78a0714 100644 --- a/_portfolio/trains_cnn.md +++ b/_portfolio/trains_cnn.md @@ -2,6 +2,7 @@ title: "Paper python code: Detecting train driveshaft damages using accelerometer signals and Differential Convolutional Neural Networks" excerpt: "Python code to [Detecting train driveshaft damages using accelerometer signals and Differential Convolutional Neural Networks](https://ui.adsabs.harvard.edu/abs/2022arXiv221109011L/abstract) paper." collection: portfolio +category: "Software" --- ## Detecting train driveshaft damages using accelerometer signals and Differential Convolutional Neural Networks