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ARG BASE_CONTAINER=ubuntu:18.04
FROM $BASE_CONTAINER
ENV DEBIAN_FRONTEND=noninteractive TZ=US/Pacific
RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
RUN apt-get update && apt-get install -y \
wget \
gcc \
g++ \
gfortran \
make \
curl \
git \
libblas-dev \
liblapack-dev \
libtool \
m4 \
libnetcdf-dev \
libnetcdff-dev \
perl \
rsync \
libffi-dev \
openssl \
bats \
python3 \
libpython3-dev \
python3-dev \
python3-setuptools \
python3-pip \
cython3 \
build-essential \
libssl-dev \
zlib1g-dev \
libbz2-dev \
libreadline-dev \
libsqlite3-dev \
llvm \
libncurses5-dev \
xz-utils \
tk-dev \
libffi-dev \
liblzma-dev
RUN wget -q http://www.mpich.org/static/downloads/3.1.4/mpich-3.1.4.tar.gz && \
tar xzf mpich-3.1.4.tar.gz && \
cd mpich-3.1.4 && \
./configure --enable-fortran --enable-cxx --prefix=/usr --enable-fast=all,O3 && \
make -j24 && \
make install && ldconfig && rm -rf /mpich-3.1.4
# install dependencies for serialbox
RUN apt-get update && apt-get install -y \
libssl-dev \
clang \
clang-format \
clang-tidy \
python3-numpy \
python3-nose \
python3-sphinx
RUN wget https://github.com/Kitware/CMake/releases/download/v3.17.3/cmake-3.17.3.tar.gz && \
tar xzf cmake-3.17.3.tar.gz && \
cd cmake-3.17.3 && \
./bootstrap && make -j4 && make install
# Install headers from the Boost library
RUN wget -q https://boostorg.jfrog.io/artifactory/main/release/1.74.0/source/boost_1_74_0.tar.gz && \
tar xzf boost_1_74_0.tar.gz && \
cd boost_1_74_0 && \
cp -r boost /usr/include/ && cd /
## Build Serialbox
###
RUN git clone -b v2.6.1 --depth 1 https://github.com/GridTools/serialbox.git /usr/src/serialbox && \
cmake -B build -S /usr/src/serialbox -DSERIALBOX_TESTING=ON -DSERIALBOX_ENABLE_FORTRAN=ON \
-DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local/serialbox && \
cmake --build build/ -j $(nproc) --target install
RUN pip3 install --upgrade pip setuptools wheel && \
ln -s /bin/python3 /bin/python && \
ln -s /bin/pip3 /bin/pip
RUN pip3 install numpy==1.19.5 matplotlib==3.3.4 ipykernel==5.5.5 ipyparallel==6.3.0 mpi4py==3.0.3 jupyter==1.0.0
COPY gt4py /gt4py
COPY fv3gfs-util /fv3gfs-util
RUN pip3 install -e /gt4py
RUN python3 -m gt4py.gt_src_manager install
RUN cd /fv3gfs-util && \
git reset --hard ab80ad59efa5a615e5e1bf3b9282f8cc613568f3 && \
cd - && \
pip3 install -e /fv3gfs-util
RUN ipython profile create --parallel --profile=mpi
COPY setup/ipcluster_config.py /root/.ipython/profile_mpi/ipcluster_config.py
ENV SERIALBOX_ROOT /usr/local/serialbox
ENV DOCKER True
ENV TINI_VERSION v0.6.0
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini
RUN chmod +x /usr/bin/tini
WORKDIR /workshop
ENTRYPOINT ["/usr/bin/tini", "--"]
CMD ["jupyter", "notebook", "--port=8888", "--no-browser", "--ip=0.0.0.0", "--allow-root"]