diff --git a/concepts/Adrenaline_dosage.yml b/concepts/Adrenaline_dosage.yml index 7aa22e3..8838920 100644 --- a/concepts/Adrenaline_dosage.yml +++ b/concepts/Adrenaline_dosage.yml @@ -4,7 +4,7 @@ identifiers: snomed: '' lower_limit: '' mapper: -- klass: MimicObservationMapper +- klass: MimicDosageMapper params: constraints: itemid: '221289' diff --git a/concepts/Age.yml b/concepts/Age.yml index 64414ef..42aa8c3 100644 --- a/concepts/Age.yml +++ b/concepts/Age.yml @@ -14,6 +14,14 @@ mapper: table: age source: mimiciv unit: year +- klass: EICUPationObservationMapper + params: + fields: + value: age + schema: eicu_crd + table: patient + source: eicu + unit: year name: Age unit: year upper_limit: '130' diff --git a/concepts/BodyHeight.yml b/concepts/BodyHeight.yml index 48bc93f..1ff260a 100644 --- a/concepts/BodyHeight.yml +++ b/concepts/BodyHeight.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: cm +- klass: EICUPationObservationMapper + params: + fields: + value: admissionheight + schema: eicu_crd + table: patient + source: eicu + unit: cm name: BodyHeight unit: cm upper_limit: '300' diff --git a/concepts/BodyTemperature.yml b/concepts/BodyTemperature.yml index df4d01a..053132e 100644 --- a/concepts/BodyTemperature.yml +++ b/concepts/BodyTemperature.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: °C +- klass: EICUObservationMapper + params: + fields: + value: temperature + schema: eicu_crd + table: vitalperiodic + source: eicu + unit: °C name: BodyTemperature unit: °C upper_limit: '45' diff --git a/concepts/Creatinine_absolute_serum.yml b/concepts/Creatinine_absolute_serum.yml index 3b1cd79..b017c79 100644 --- a/concepts/Creatinine_absolute_serum.yml +++ b/concepts/Creatinine_absolute_serum.yml @@ -8,10 +8,10 @@ mapper: params: constraints: itemid: '220615' - schema: mimic_hosp - table: labevents + schema: mimiciv_icu + table: chartevents source: mimiciv - unit: '' + unit: 'mg/dl' name: Creatinine_absolute_serum unit: mg/dl upper_limit: '1000000' diff --git a/concepts/DiastolicBloodPressue_Arterial_Invasive.yml b/concepts/DiastolicBloodPressue_Arterial_Invasive.yml index a1c8f8a..75f63a7 100644 --- a/concepts/DiastolicBloodPressue_Arterial_Invasive.yml +++ b/concepts/DiastolicBloodPressue_Arterial_Invasive.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: mmHg +- klass: EICUObservationMapper + params: + fields: + value: systemicdiastolic + schema: eicu_crd + table: vitalperiodic + source: eicu + unit: mmHg name: DiastolicBloodPressue_Arterial_Invasive unit: mmHg upper_limit: '200' diff --git a/concepts/DiastolicBloodPressue_Arterial_noninvasive.yml b/concepts/DiastolicBloodPressue_Arterial_noninvasive.yml index 41fad79..e89de0f 100644 --- a/concepts/DiastolicBloodPressue_Arterial_noninvasive.yml +++ b/concepts/DiastolicBloodPressue_Arterial_noninvasive.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: mmHg +- klass: EICUObservationMapper + params: + fields: + value: noninvasivediasystolic + schema: eicu_crd + table: vitalaperiodic + source: eicu + unit: mmHg name: DiastolicBloodPressue_Arterial_noninvasive unit: mmHg upper_limit: '200' diff --git a/concepts/Dobutamine_dosage.yml b/concepts/Dobutamine_dosage.yml index 687e768..5db0a1c 100644 --- a/concepts/Dobutamine_dosage.yml +++ b/concepts/Dobutamine_dosage.yml @@ -4,7 +4,7 @@ identifiers: snomed: '' lower_limit: '' mapper: -- klass: MimicObservationMapper +- klass: MimicDosageMapper params: constraints: itemid: '221653' diff --git a/concepts/Gender.yml b/concepts/Gender.yml index 4a5a0d4..c292eac 100644 --- a/concepts/Gender.yml +++ b/concepts/Gender.yml @@ -6,12 +6,22 @@ lower_limit: '' mapper: - klass: MimicObservationMapper params: - constraints: - itemid: '226228' - schema: mimiciv_icu - table: chartevents + fields: + value: gender + timestamp: anchor_year + constraints: {} + schema: mimiciv_hosp + table: patients source: mimiciv unit: '' +- klass: EICUPationObservationMapper + params: + fields: + value: gender + schema: eicu_crd + table: patient + source: eicu + unit: '' name: Gender unit: '' upper_limit: '' diff --git a/concepts/HeartRate.yml b/concepts/HeartRate.yml index dc66431..60a7cf8 100644 --- a/concepts/HeartRate.yml +++ b/concepts/HeartRate.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: bpm +- klass: EICUObservationMapper + params: + fields: + value: heartrate + schema: eicu_crd + table: vitalperiodic + source: eicu + unit: bpm name: HeartRate unit: bpm upper_limit: '300' diff --git a/concepts/MeanBloodPressue_Arterial_Invasive.yml b/concepts/MeanBloodPressue_Arterial_Invasive.yml index a0aa170..e5dfad6 100644 --- a/concepts/MeanBloodPressue_Arterial_Invasive.yml +++ b/concepts/MeanBloodPressue_Arterial_Invasive.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: mmHg +- klass: EICUObservationMapper + params: + fields: + value: systemicmean + schema: eicu_crd + table: vitalperiodic + source: eicu + unit: mmHg name: MeanBloodPressue_Arterial_Invasive unit: mmHg upper_limit: '200' diff --git a/concepts/MeanBloodPressue_Arterial_Noninvasive.yml b/concepts/MeanBloodPressue_Arterial_Noninvasive.yml index 9f8d9fe..73ba465 100644 --- a/concepts/MeanBloodPressue_Arterial_Noninvasive.yml +++ b/concepts/MeanBloodPressue_Arterial_Noninvasive.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: mmHg +- klass: EICUObservationMapper + params: + fields: + value: noninvasivemean + schema: eicu_crd + table: vitalaperiodic + source: eicu + unit: mmHg name: MeanBloodPressue_Arterial_Noninvasive unit: mmHg upper_limit: '200' diff --git a/concepts/Norepinephrine_dosage.yml b/concepts/Norepinephrine_dosage.yml index c73c2bf..59b0436 100644 --- a/concepts/Norepinephrine_dosage.yml +++ b/concepts/Norepinephrine_dosage.yml @@ -4,7 +4,7 @@ identifiers: snomed: '' lower_limit: '' mapper: -- klass: MimicObservationMapper +- klass: MimicDosageMapper params: constraints: itemid: '221906' diff --git a/concepts/OxygenSaturation_Peripheral.yml b/concepts/OxygenSaturation_Peripheral.yml index c3da6a0..e9361f6 100644 --- a/concepts/OxygenSaturation_Peripheral.yml +++ b/concepts/OxygenSaturation_Peripheral.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: '%' +- klass: EICUObservationMapper + params: + fields: + value: sao2 + schema: eicu_crd + table: vitalperiodic + source: eicu + unit: '%' name: OxygenSaturation_Peripheral unit: '%' upper_limit: '100' diff --git a/concepts/SystolicBloodPressure_Arterial_Invasive.yml b/concepts/SystolicBloodPressure_Arterial_Invasive.yml index 714f507..33ed4c9 100644 --- a/concepts/SystolicBloodPressure_Arterial_Invasive.yml +++ b/concepts/SystolicBloodPressure_Arterial_Invasive.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: mmHg +- klass: EICUObservationMapper + params: + fields: + value: systemicsystolic + schema: eicu_crd + table: vitalperiodic + source: eicu + unit: mmHg name: SystolicBloodPressure_Arterial_Invasive unit: mmHg upper_limit: '300' diff --git a/concepts/SystolicBloodPressure_Arterial_noninvasive.yml b/concepts/SystolicBloodPressure_Arterial_noninvasive.yml index 87bdcd9..7cd9339 100644 --- a/concepts/SystolicBloodPressure_Arterial_noninvasive.yml +++ b/concepts/SystolicBloodPressure_Arterial_noninvasive.yml @@ -12,6 +12,14 @@ mapper: table: chartevents source: mimiciv unit: mmHg +- klass: EICUObservationMapper + params: + fields: + value: noninvasivesystolic + schema: eicu_crd + table: vitalaperiodic + source: eicu + unit: mmHg name: SystolicBloodPressure_Arterial_noninvasive unit: mmHg upper_limit: '200' diff --git a/concepts/Vancomycine_dosage.yml b/concepts/Vancomycine_dosage.yml index b9d9fce..4f57af2 100644 --- a/concepts/Vancomycine_dosage.yml +++ b/concepts/Vancomycine_dosage.yml @@ -4,7 +4,7 @@ identifiers: snomed: '' lower_limit: '' mapper: -- klass: MimicObservationMapper +- klass: MimicDosageMapper params: constraints: itemid: '225798' diff --git a/concepts/Vasopressine_dosage.yml b/concepts/Vasopressine_dosage.yml index 21acf64..84381d1 100644 --- a/concepts/Vasopressine_dosage.yml +++ b/concepts/Vasopressine_dosage.yml @@ -4,7 +4,7 @@ identifiers: snomed: '' lower_limit: '' mapper: -- klass: MimicObservationMapper +- klass: MimicDosageMapper params: constraints: itemid: '222315'