From 7f3668d1402d2329e0fccb55609c4aaa61193c89 Mon Sep 17 00:00:00 2001 From: Daniel Hollas <daniel.hollas@bristol.ac.uk> Date: Mon, 8 Jul 2024 03:53:37 +0100 Subject: [PATCH] Support and test with py3.11 (#619) - update scikit-learn dependency to support python 3.11 --- .github/workflows/ci.yml | 2 +- pyproject.toml | 17 +++++++++++++---- setup.cfg | 2 +- 3 files changed, 15 insertions(+), 6 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ab5662b2d..2214f75b6 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -82,7 +82,7 @@ jobs: strategy: matrix: - python-version: ['3.9', '3.10'] + python-version: ['3.9', '3.11'] # Test on the latest and oldest supported version aiida-core-version: [2.2.2, 2.4.3] fail-fast: false diff --git a/pyproject.toml b/pyproject.toml index 3126edfcc..fad086a2a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,8 +7,16 @@ build-backend = "setuptools.build_meta" [tool.pytest.ini_options] filterwarnings = [ - 'error', - 'ignore::DeprecationWarning:bokeh.core.property.primitive', + # The following deprecation warnings come from Python 3.12 stdlib modules + "ignore:datetime.datetime.:DeprecationWarning:", + # This one is coming from plumpy + "ignore:There is no current event loop:DeprecationWarning:", + # This deprecation warning coming from sqlite3 module might go away if we update bokeh + "ignore:The default datetime adapter is deprecated as of Python 3.12; see the sqlite3 documentation for suggested replacement recipes:DeprecationWarning:", + # This is needed since SQLAlchemy 2.0, see + # https://github.com/aiidalab/aiidalab-widgets-base/issues/605 + 'ignore:Object of type .* not in session, .* operation along .* will not proceed:sqlalchemy.exc.SAWarning', + 'ignore::DeprecationWarning:bokeh', 'ignore:Creating AiiDA configuration:UserWarning:aiida', 'ignore:crystal system:UserWarning:ase.io.cif', 'ignore::DeprecationWarning:ase.atoms', @@ -22,8 +30,9 @@ filterwarnings = [ 'ignore:Exception ignored in:pytest.PytestUnraisableExceptionWarning:_pytest', 'ignore::DeprecationWarning:pytest_html', 'ignore::DeprecationWarning:jupyter_client', - 'ignore::DeprecationWarning:selenium', - 'ignore::DeprecationWarning:pytest_selenium', + # This warning is coming from circus (aiida-core dependency): + # https://github.com/circus-tent/circus/issues/1215 + "ignore:'pipes' is deprecated and slated for removal in Python 3.13:DeprecationWarning:", ] [tool.ruff] diff --git a/setup.cfg b/setup.cfg index d64495505..8552ea497 100644 --- a/setup.cfg +++ b/setup.cfg @@ -60,7 +60,7 @@ optimade = ipyoptimade~=0.1 smiles = rdkit>=2021.09.2 - scikit-learn~=1.0.0 + scikit-learn~=1.1 docs = sphinx sphinx-design