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DESCRIPTION
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DESCRIPTION
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Package: microbiomeDataSets
Title: Experiment Hub based microbiome datasets
Version: 1.13.3
Authors@R:
c(
person("Leo", "Lahti", role = c("cre", "aut"),
comment = c(ORCID = "0000-0001-5537-637X"),
email = "[email protected]"),
person(given = "Felix G.M.", family = "Ernst", role = c("aut"),
email = "[email protected]",
comment = c(ORCID = "0000-0001-5064-0928")),
person(given = "Sudarshan", "Shetty", role = c("aut"),
email = "[email protected]",
comment = c(ORCID = "0000-0001-7280-9915")),
person(given = "Chouaib", family = "Benchraka", role = c("ctb"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-1167-7848")),
person(given = "Yagmur", family = "Simsek", role = c("ctb"))
)
Description:
microbiomeDataSets is a collection of microbiome datasets loaded from
Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference
for workflows and vignettes published adjacent to the microbiome analysis
tools on Bioconductor. Additional datasets can be added overtime and
additions from authors are welcome.
License: CC0
Encoding: UTF-8
biocViews:
ExperimentHub,
ExperimentData,
MicrobiomeData,
SequencingData
Depends:
R (>= 4.1),
SummarizedExperiment,
TreeSummarizedExperiment,
MultiAssayExperiment
Imports:
methods,
utils,
BiocGenerics,
ExperimentHub,
Biostrings,
ape
Suggests:
knitr,
rmarkdown,
BiocStyle,
SingleCellExperiment,
testthat
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr