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Updating grant metadata for the zenodo upload #134

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alexlancaster opened this issue Oct 3, 2023 · 1 comment
Open

Updating grant metadata for the zenodo upload #134

alexlancaster opened this issue Oct 3, 2023 · 1 comment
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documentation doc fixes, enhancements
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@alexlancaster
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alexlancaster commented Oct 3, 2023

@rsingle I've managed to get the workflow that will eventually upload and sync our code releases with Zenodo (and also provide DOIs for each release). I'm working off the Zenodo "Sandbox", which means these aren't "real" DOIs or citeable uploads, but it gives you the ability the "preview" what they will look like, here's example:

https://sandbox.zenodo.org/record/1244969 (0.9.80)
https://sandbox.zenodo.org/record/1244971 (0.9.82)

As part of the upload, I can provide a lot extra metadata via the .zenodo.json file: https://github.com/alexlancaster/pypop/blob/zenodo_testing/.zenodo.json

One of the things is grants. I think it would be great to add them in as well (you'll see I managed to find several). To add them we put them in the .zenodo.json in the following format:

pypop/.zenodo.json

Lines 77 to 86 in 974a3b2

"grants": [
{
"id": "10.13039/100000002::5U24AI049213-05",
"_comment": "13th IHWG workshop (5th year?)"
"id": "10.13039/100000002::1R13AI066863-01",
"_comment": "14th IHWG workshop"
"id": "10.13039/100000002::2R01GM035326-13A1",
"_comment": "Population genetics of the HLA region - RO1 grant"
}
],

IDs look similar to a DOI: 10.13039/100000002::5U24AI049213-05, my understanding is that it breaks down like:

  • 10.13039 (grant)
  • 100000002 (granting agency, in this case, NIH)
  • 5U24AI049213-05 (the fully-qualified grant number)

I took a look at the Pubmed to see if I could get as full a list as possible, and you can see several here:

https://pubmed.ncbi.nlm.nih.gov/17445199/

but I need some help translating these into the fully-qualified grant numbers that I can give to Zenodo and/or checking that they are correct. Some of one's listed on PubMed might even be duplicates? Once I have better data I can look them up on Zenodo and figure out the encoding of them.

@alexlancaster alexlancaster added the documentation doc fixes, enhancements label Oct 3, 2023
@alexlancaster alexlancaster added this to the 1.0.0 Release Candidate milestone Oct 3, 2023
@alexlancaster
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alexlancaster commented Oct 3, 2023

Here is the list from PubMed:

R01 GM035326/GM/NIGMS NIH HHS/United States
R13 AI066863/AI/NIAID NIH HHS/United States
U24 AI049213/AI/NIAID NIH HHS/United States
AI49213/AI/NIAID NIH HHS/United States 

The paper also mentions a DOE grant.

alexlancaster added a commit that referenced this issue Oct 10, 2023
update Michael Mariani's affilation
add more grant metadata, still needs checking (#134)
add @jspaaks to `AUTHORS.rst`
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