Error when loading h5 files

[pratibhajagannatha]

Pandas version: 1.1.5
deepdish version: 0.3.6

Error:

---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/deepdish/io/hdf5io.py in _load_level(handler, level, pathtable)
    478     try:
--> 479         return pathtable[pathname]
    480     except KeyError:

KeyError: '/data'

During handling of the above exception, another exception occurred:

ValueError                                Traceback (most recent call last)
/tmp/ipykernel_49787/142112669.py in <module>
----> 1 example = dd.io.load(os.path.join(base_dir, '{}.h5'.format('BUD13')))

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/deepdish/io/hdf5io.py in load(path, group, sel, unpack)
    654                 name = next(iter(grp._v_children))
    655                 data = _load_specific_level(h5file, grp, name, sel=sel,
--> 656                                             pathtable=pathtable)
    657                 do_unpack = False
    658             elif sel is not None:

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/deepdish/io/hdf5io.py in _load_specific_level(handler, grp, path, sel, pathtable)
    317                 return _load_sliced_level(handler, getattr(grp, vv[0]), sel)
    318             else:
--> 319                 return _load_level(handler, getattr(grp, vv[0]), pathtable)
    320         elif hasattr(grp, '_v_attrs') and vv[0] in grp._v_attrs:
    321             if sel is not None:

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/deepdish/io/hdf5io.py in _load_level(handler, level, pathtable)
    480     except KeyError:
    481         pathtable[pathname] = _load_nonlink_level(handler, node, pathtable,
--> 482                                                   pathname)
    483         return pathtable[pathname]
    484 

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/deepdish/io/hdf5io.py in _load_nonlink_level(handler, level, pathtable, pathname)
    435     elif isinstance(level, tables.VLArray):
    436         if level.shape == (1,):
--> 437             return _load_pickled(level)
    438         else:
    439             return level[:]

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/deepdish/io/hdf5io.py in _load_pickled(level)
    341 
    342 def _load_pickled(level):
--> 343     if isinstance(level[0], ForcePickle):
    344         return level[0].obj
    345     else:

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/tables/vlarray.py in __getitem__(self, key)
    679                 key += self.nrows
    680             (start, stop, step) = self._process_range(key, key + 1, 1)
--> 681             return self.read(start, stop, step)[0]
    682         elif isinstance(key, slice):
    683             start, stop, step = self._process_range(

~/anaconda3/envs/Metadensity/lib/python3.7/site-packages/tables/vlarray.py in read(self, start, stop, step)
    819             listarr = []
    820         else:
--> 821             listarr = self._read_array(start, stop, step)
    822 
    823         atom = self.atom

tables/hdf5extension.pyx in tables.hdf5extension.VLArray._read_array()

ValueError: cannot set WRITEABLE flag to True of this array

[byee4]

Was this in the module or was the package installed in your own environment?

[pratibhajagannatha]

This was in the module

[byee4]

Slack me the notebook to test?

[byee4]

#1