DESCRIPTION

Package: ctDNAtools
Title: Analyze Circulating Tumor DNA Sequencing Data
Version: 0.4.1
Authors@R: 
    person(given = "Amjad",
           family = "Alkodsi",
           role = c("aut", "cre"),
           email = "amjad.alkodsi@gmail.com",
           comment = c(ORCID = "0000-0003-3528-4683"))
Description: Contains tools to analyze minimal residual disease and cell-free DNA fragmentation from aligned sequencing data.
    More details on the methods can be found in:
    Amjad Alkodsi, Leo Meriranta, Annika Pasanen, Sirpa Leppä (2020) <doi:10.1101/2020.01.27.912790>.
License: MIT + file LICENSE
biocViews:
Depends: 
    R (>= 3.6.0),
Imports:
    magrittr,
    dplyr (>= 0.8.3),
    tidyr (>= 1.0.0),
    purrr (>= 0.3.2),
    Rsamtools (>= 2.0.0),
    assertthat (>= 0.2.1),
    GenomicRanges,
    IRanges,
    GenomeInfoDb,
    BiocGenerics,
    BSgenome,
    GenomicAlignments,
    rlang (>= 0.4.0),
    Biostrings,
    methods,
    furrr (>= 0.1.0),
    ellipsis (>= 0.3.0),
    VariantAnnotation (>= 1.30.1),
    BSgenome.Hsapiens.UCSC.hg19,
    GenomeInfoDbData
Suggests:
    testthat (>= 2.1.0),
    ggplot2,
    knitr,
    rmarkdown,
    covr,
    pkgdown
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr
URL: https://github.com/alkodsi/ctDNAtools
BugReports: https://github.com/alkodsi/ctDNAtools/issues