What this project is: A template project for biomedical data science projects with template R markdown files.
What this project isn't: A codebase for running analyses.
/analysis: Contains all code notebooks and rendered html notebooks.
/figures: You could, if you like, store rendered results from your analyses here, so that you can find them when it's time to publish!
/data: Where is /data? It's a better practice to store the data on Synapse, in the challenge project, so that others can reference the data if they so choose.
As seen in the table below, you can optionally and ideally knit your code notebooks to html so that they can be displayed on github.io. In order to set this up, you should enable Github Pages in the Settings for your project, and configure it to use the gh-pages branch as source. Once you've done this, any html files in the gh-pages branch will be rendered on github.io.
You should insert the name and description of your Project here, with a link to external resources related to this project.
Here's a summary of the analyses we've run so far.
| analysis | description |
|---|---|
| Determining top performers | A simple description of a bootstrap analysis to determine the top performers in a challenge. |
| Comparison to baseline/comparator model | A simple description of a bootstrap analysis to determine the performance of participants relative to a comparator model. |