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pyproject.toml
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[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.poetry]
name = "armscan_env"
version = "0.1.0"
description = ""
authors = ["Carlo Cagnetta <[email protected]>", "Michael Panchenko <[email protected]>"]
license = "MIT"
readme = "README.md"
homepage = "https://github.com/appliedAI-Initiative/armscan_env"
classifiers = [
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3.11",
]
exclude = ["test/*", "examples/*", "docs/*"]
[tool.poetry.dependencies]
python = "^3.11"
accsr = "^0.4.6"
celluloid = "^0.2.0"
ffmpeg = "^1.4"
gymnasium = { path = "./gymnasium", develop = true}
jupyter = "^1.0.0"
matplotlib = "^3.8.3"
numpy = "^1"
pandas = "^2"
plotly = "^5.19.0"
pytest = "^8.0.2"
pytest-lazy-fixtures = "^1.0.5"
scikit-learn = "^1.4.1.post1"
scipy = "^1.12.0"
sensai-utils = "^1.2.1"
simpleitk = "^2.3.1"
tianshou = { path = "./tianshou", develop = true}
torch = "^2.5.1"
[tool.poetry.group.dev]
optional = true
[tool.poetry.group.dev.dependencies]
black = { version = "^23.7.0", extras = ["jupyter"] }
docutils = "0.20.1"
jinja2 = "*"
jupyter = "^1.0.0"
jupyter-book = "^1.0.0"
mypy = "^1.4.1"
nbqa = "^1.7.1"
nbstripout = "^0.6.1"
poethepoet = "^0.20.0"
pre-commit = "^3.3.3"
pytest = "*"
pytest-cov = "*"
ruff = "^0.0.285"
seaborn = "^0.13.2"
sphinx = "^7"
sphinx-book-theme = "^1.0.1"
sphinx-comments = "^0.0.3"
sphinx-copybutton = "^0.5.2"
sphinx-jupyterbook-latex = "^1.0.0"
sphinx-togglebutton = "^0.3.2"
sphinx-toolbox = "^3.5.0"
sphinxcontrib-bibtex = "*"
sphinxcontrib-spelling = "^8.0.0"
[tool.mypy]
allow_redefinition = true
check_untyped_defs = true
disallow_incomplete_defs = true
disallow_untyped_defs = true
ignore_missing_imports = true
no_implicit_optional = true
pretty = true
show_error_codes = true
show_error_context = true
show_traceback = true
strict_equality = true
strict_optional = true
warn_no_return = true
warn_redundant_casts = true
warn_unreachable = true
warn_unused_configs = true
warn_unused_ignores = true
exclude = "^build/|^docs/"
[tool.doc8]
max-line-length = 1000
[tool.black]
line-length = 100
target-version = ["py311"]
[tool.nbqa.exclude]
ruff = "\\.jupyter_cache|jupyter_execute"
mypy = "\\.jupyter_cache|jupyter_execute"
[tool.ruff]
select = [
"ASYNC", "B", "C4", "C90", "COM", "D", "DTZ", "E", "F", "FLY", "G", "I", "ISC", "PIE", "PLC", "PLE", "PLW", "RET", "RUF", "RSE", "SIM", "TID", "UP", "W", "YTT",
]
ignore = [
"E501", # line too long. black does a good enough job
"E741", # variable names like "l". this isn't a huge problem
"B008", # do not perform function calls in argument defaults. we do this sometimes
"B011", # assert false. we don't use python -O
"B028", # we don't need explicit stacklevel for warnings
"D100", "D101", "D102", "D104", "D105", "D107", "D203", "D213", "D401", "D402", # docstring stuff
"DTZ005", # we don't need that
# remaining rules from https://github.com/psf/black/blob/main/.flake8 (except W503)
# this is a simplified version of config, making vscode plugin happy
"E402", "E501", "E701", "E731", "C408", "E203",
# Logging statement uses f-string warning
"G004",
# Unnecessary `elif` after `return` statement
"RET505",
"D106", # undocumented public nested class
"D205", # blank line after summary (prevents summary-only docstrings, which makes no sense)
]
unfixable = [
]
extend-fixable = [
"F401", # unused import
"B905", # bugbear
]
target-version = "py311"
[tool.ruff.mccabe]
max-complexity = 20
[tool.ruff.per-file-ignores]
"test/**" = ["D103"]
"docs/**" = ["D103"]
"examples/**" = ["D103"]
[tool.poetry_bumpversion.file."armscan_env/__init__.py"]
[tool.poetry-sort]
move-optionals-to-bottom = true
[tool.poe.env]
PYDEVD_DISABLE_FILE_VALIDATION="1"
# keep relevant parts in sync with pre-commit
[tool.poe.tasks] # https://github.com/nat-n/poethepoet
test = "pytest test --cov=armscan_env --cov-report=xml --cov-report=term-missing --durations=0 -v --color=yes"
# Adjust to a smaller set of tests if appropriate
test-subset = "pytest test --color=yes"
_black_check = "black --check src scripts docs notebooks"
_ruff_check = "ruff check src scripts docs notebooks test"
_ruff_check_nb = "nbqa ruff docs notebooks"
_black_format = "black src scripts docs notebooks test"
_ruff_format = "ruff --fix src scripts docs notebooks test"
_ruff_format_nb = "nbqa ruff --fix docs notebooks"
lint = ["_black_check", "_ruff_check", "_ruff_check_nb"]
_poetry_install_sort_plugin = "poetry self add poetry-plugin-sort"
_poetry_sort = "poetry sort"
clean-nbs = "python nbstripout.py"
format = ["_black_format", "_ruff_format", "_ruff_format_nb", "_poetry_install_sort_plugin", "_poetry_sort"]
_autogen_rst = "python docs/autogen_rst.py"
_sphinx_build = "sphinx-build -W -b html docs docs/_build"
_jb_generate_toc = "python docs/create_toc.py"
_jb_generate_config = "jupyter-book config sphinx docs/"
doc-clean = "rm -rf docs/_build"
doc-generate-files = ["_autogen_rst", "_jb_generate_toc", "_jb_generate_config"]
doc-spellcheck = "sphinx-build -W -b spelling docs docs/_build"
doc-build = ["doc-generate-files", "doc-spellcheck", "_sphinx_build"]
_mypy = "mypy src"
_mypy_nb = "nbqa mypy docs"
type-check = ["_mypy", "_mypy_nb"]