Currently this is only set up to run on Uppmax with singularity.
first pull the singularity image like this :
singularity pull --name rnaseq_vax.sif docker://arontommi/rnaseq_vax:latest
Pull the project from github
wget https://github.com/arontommi/RNAseq-VAX/archive/master.zip
mkdir -p ~/RNAseq-VAX
unzip master.zip -d ~/RNAseq-VAX/
cd ~/RNAseq-VAX/
And you are good go go!