some errors when do "make"

[gaom001]

lumpy-sv-0.3.1 gaom4$ make
cd lib/htslib &&
./configure --disable-bz2 --disable-lzma --enable-libcurl
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
checking for curl/curl.h... yes
checking for curl_easy_pause in -lcurl... yes
checking for CCHmac... no
checking for library containing HMAC... -lcrypto
checking for library containing regcomp... none required
checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: linking htscodecs_bundled.mk to htscodecs.mk
CFLAGS=" -DBGZF" make -C lib/htslib --no-print-directory CFLAGS="-DBGZF_MT"
gcc -DBGZF_MT -I. -c -o kfunc.o kfunc.c
gcc -DBGZF_MT -I. -c -o kstring.o kstring.c
gcc -DBGZF_MT -I. -c -o bcf_sr_sort.o bcf_sr_sort.c
gcc -DBGZF_MT -I. -c -o bgzf.o bgzf.c
bgzf.c:57:0: warning: "BGZF_MT" redefined [enabled by default]
#define BGZF_MT
^
:0:0: note: this is the location of the previous definition
gcc -DBGZF_MT -I. -c -o errmod.o errmod.c
gcc -DBGZF_MT -I. -c -o faidx.o faidx.c
gcc -DBGZF_MT -I. -c -o header.o header.c
gcc -DBGZF_MT -I. -c -o hfile.o hfile.c
echo '#define HTS_VERSION_TEXT "1.15"' > version.h
echo '#define HTS_CC "gcc"' > config_vars.h
echo '#define HTS_CPPFLAGS ""' >> config_vars.h
echo '#define HTS_CFLAGS "-DBGZF_MT"' >> config_vars.h
echo '#define HTS_LDFLAGS "-fvisibility=hidden "' >> config_vars.h
echo '#define HTS_LIBS "-lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto"' >> config_vars.h
gcc -DBGZF_MT -I. -c -o hts.o hts.c
gcc -DBGZF_MT -I. -c -o hts_expr.o hts_expr.c
gcc -DBGZF_MT -I. -c -o hts_os.o hts_os.c
gcc -DBGZF_MT -I. -c -o md5.o md5.c
gcc -DBGZF_MT -I. -c -o multipart.o multipart.c
gcc -DBGZF_MT -I. -c -o probaln.o probaln.c
gcc -DBGZF_MT -I. -c -o realn.o realn.c
gcc -DBGZF_MT -I. -c -o regidx.o regidx.c
gcc -DBGZF_MT -I. -c -o region.o region.c
gcc -DBGZF_MT -I. -c -o sam.o sam.c
gcc -DBGZF_MT -I. -c -o synced_bcf_reader.o synced_bcf_reader.c
gcc -DBGZF_MT -I. -c -o vcf_sweep.o vcf_sweep.c
gcc -DBGZF_MT -I. -c -o tbx.o tbx.c
gcc -DBGZF_MT -I. -c -o textutils.o textutils.c
gcc -DBGZF_MT -I. -c -o thread_pool.o thread_pool.c
gcc -DBGZF_MT -I. -c -o vcf.o vcf.c
gcc -DBGZF_MT -I. -c -o vcfutils.o vcfutils.c
gcc -DBGZF_MT -I. -c -o cram/cram_codecs.o cram/cram_codecs.c
gcc -DBGZF_MT -I. -c -o cram/cram_decode.o cram/cram_decode.c
gcc -DBGZF_MT -I. -c -o cram/cram_encode.o cram/cram_encode.c
gcc -DBGZF_MT -I. -c -o cram/cram_external.o cram/cram_external.c
gcc -DBGZF_MT -I. -c -o cram/cram_index.o cram/cram_index.c
gcc -DBGZF_MT -I. -c -o cram/cram_io.o cram/cram_io.c
gcc -DBGZF_MT -I. -c -o cram/cram_stats.o cram/cram_stats.c
gcc -DBGZF_MT -I. -c -o cram/mFILE.o cram/mFILE.c
gcc -DBGZF_MT -I. -c -o cram/open_trace_file.o cram/open_trace_file.c
gcc -DBGZF_MT -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c
gcc -DBGZF_MT -I. -c -o cram/string_alloc.o cram/string_alloc.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c
gcc -DBGZF_MT -I. -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c
gcc -DBGZF_MT -I. -c -o hfile_libcurl.o hfile_libcurl.c
gcc -DBGZF_MT -I. -c -o hfile_gcs.o hfile_gcs.c
gcc -DBGZF_MT -I. -c -o hfile_s3.o hfile_s3.c
gcc -DBGZF_MT -I. -c -o hfile_s3_write.o hfile_s3_write.c
ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o
ranlib libhts.a
gcc -DBGZF_MT -I. -fpic -c -o kfunc.pico kfunc.c
gcc -DBGZF_MT -I. -fpic -c -o kstring.pico kstring.c
gcc -DBGZF_MT -I. -fpic -c -o bcf_sr_sort.pico bcf_sr_sort.c
gcc -DBGZF_MT -I. -fpic -c -o bgzf.pico bgzf.c
bgzf.c:57:0: warning: "BGZF_MT" redefined [enabled by default]
#define BGZF_MT
^
:0:0: note: this is the location of the previous definition
gcc -DBGZF_MT -I. -fpic -c -o errmod.pico errmod.c
gcc -DBGZF_MT -I. -fpic -c -o faidx.pico faidx.c
gcc -DBGZF_MT -I. -fpic -c -o header.pico header.c
gcc -DBGZF_MT -I. -fpic -c -o hfile.pico hfile.c
gcc -DBGZF_MT -I. -fpic -c -o hts.pico hts.c
gcc -DBGZF_MT -I. -fpic -c -o hts_expr.pico hts_expr.c
gcc -DBGZF_MT -I. -fpic -c -o hts_os.pico hts_os.c
gcc -DBGZF_MT -I. -fpic -c -o md5.pico md5.c
gcc -DBGZF_MT -I. -fpic -c -o multipart.pico multipart.c
gcc -DBGZF_MT -I. -fpic -c -o probaln.pico probaln.c
gcc -DBGZF_MT -I. -fpic -c -o realn.pico realn.c
gcc -DBGZF_MT -I. -fpic -c -o regidx.pico regidx.c
gcc -DBGZF_MT -I. -fpic -c -o region.pico region.c
gcc -DBGZF_MT -I. -fpic -c -o sam.pico sam.c
gcc -DBGZF_MT -I. -fpic -c -o synced_bcf_reader.pico synced_bcf_reader.c
gcc -DBGZF_MT -I. -fpic -c -o vcf_sweep.pico vcf_sweep.c
gcc -DBGZF_MT -I. -fpic -c -o tbx.pico tbx.c
gcc -DBGZF_MT -I. -fpic -c -o textutils.pico textutils.c
gcc -DBGZF_MT -I. -fpic -c -o thread_pool.pico thread_pool.c
gcc -DBGZF_MT -I. -fpic -c -o vcf.pico vcf.c
gcc -DBGZF_MT -I. -fpic -c -o vcfutils.pico vcfutils.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_codecs.pico cram/cram_codecs.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_decode.pico cram/cram_decode.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_encode.pico cram/cram_encode.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_external.pico cram/cram_external.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_index.pico cram/cram_index.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_io.pico cram/cram_io.c
gcc -DBGZF_MT -I. -fpic -c -o cram/cram_stats.pico cram/cram_stats.c
gcc -DBGZF_MT -I. -fpic -c -o cram/mFILE.pico cram/mFILE.c
gcc -DBGZF_MT -I. -fpic -c -o cram/open_trace_file.pico cram/open_trace_file.c
gcc -DBGZF_MT -I. -fpic -c -o cram/pooled_alloc.pico cram/pooled_alloc.c
gcc -DBGZF_MT -I. -fpic -c -o cram/string_alloc.pico cram/string_alloc.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c
gcc -DBGZF_MT -I. -fpic -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c
gcc -DBGZF_MT -I. -fpic -c -o hfile_libcurl.pico hfile_libcurl.c
gcc -DBGZF_MT -I. -fpic -c -o hfile_gcs.pico hfile_gcs.c
gcc -DBGZF_MT -I. -fpic -c -o hfile_s3.pico hfile_s3.c
gcc -DBGZF_MT -I. -fpic -c -o hfile_s3_write.pico hfile_s3_write.c
gcc -shared -Wl,-soname,libhts.so.3 -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico hfile_s3_write.pico -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
ln -sf libhts.so libhts.so.3
gcc -DBGZF_MT -I. -c -o bgzip.o bgzip.c
gcc -fvisibility=hidden -o bgzip bgzip.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o htsfile.o htsfile.c
gcc -fvisibility=hidden -o htsfile htsfile.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o tabix.o tabix.c
gcc -fvisibility=hidden -o tabix tabix.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/hts_endian.o test/hts_endian.c
gcc -fvisibility=hidden -o test/hts_endian test/hts_endian.o -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto
gcc -DBGZF_MT -I. -c -o test/fieldarith.o test/fieldarith.c
gcc -fvisibility=hidden -o test/fieldarith test/fieldarith.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/hfile.o test/hfile.c
gcc -fvisibility=hidden -o test/hfile test/hfile.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/pileup.o test/pileup.c
gcc -fvisibility=hidden -o test/pileup test/pileup.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/pileup_mod.o test/pileup_mod.c
gcc -fvisibility=hidden -o test/pileup_mod test/pileup_mod.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/plugins-dlhts.o test/plugins-dlhts.c
gcc -fvisibility=hidden -o test/plugins-dlhts test/plugins-dlhts.o -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto
gcc -DBGZF_MT -I. -c -o test/sam.o test/sam.c
gcc -fvisibility=hidden -o test/sam test/sam.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_bgzf.o test/test_bgzf.c
gcc -fvisibility=hidden -o test/test_bgzf test/test_bgzf.o libhts.a -lz -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_expr.o test/test_expr.c
gcc -fvisibility=hidden -o test/test_expr test/test_expr.o libhts.a -lz -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_kfunc.o test/test_kfunc.c
gcc -fvisibility=hidden -o test/test_kfunc test/test_kfunc.o libhts.a -lz -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_kstring.o test/test_kstring.c
gcc -fvisibility=hidden -o test/test_kstring test/test_kstring.o libhts.a -lz -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_mod.o test/test_mod.c
gcc -fvisibility=hidden -o test/test_mod test/test_mod.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_realn.o test/test_realn.c
gcc -fvisibility=hidden -o test/test_realn test/test_realn.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test-regidx.o test/test-regidx.c
gcc -fvisibility=hidden -o test/test-regidx test/test-regidx.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_str2int.o test/test_str2int.c
gcc -fvisibility=hidden -o test/test_str2int test/test_str2int.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_view.o test/test_view.c
gcc -fvisibility=hidden -o test/test_view test/test_view.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_index.o test/test_index.c
gcc -fvisibility=hidden -o test/test_index test/test_index.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test-vcf-api.o test/test-vcf-api.c
gcc -fvisibility=hidden -o test/test-vcf-api test/test-vcf-api.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c
gcc -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test-bcf-sr.o test/test-bcf-sr.c
gcc -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c
gcc -DBGZF_MT -I. -c -o test/test-bcf-translate.o test/test-bcf-translate.c
gcc -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test-parse-reg.o test/test-parse-reg.c
gcc -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
gcc -DBGZF_MT -I. -c -o test/test_introspection.o test/test_introspection.c
gcc -fvisibility=hidden -o test/test_introspection test/test_introspection.o libhts.a -lz -lm -lz -L /home/gaom4/src/zlib-1.2.8 -lcurl -lcrypto -lpthread
sed -n '/^static_libs=/s/[^=]=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk
sed -e 's#@-includedir@#'pwd'#g;s#@-libdir@#'pwd'#g' htslib.pc.tmp > htslib-uninstalled.pc
[ -d bin ] || mkdir -p bin
make --no-print-directory -C src/filter/
cc -I../../lib/htslib/ -o lumpy_filter filter.c ../../lib/htslib/libhts.a -lcrypto -lcurl -lpthread -lz
../../lib/htslib/libhts.a(fqzcomp_qual.o): In function fqz_qual_stats': fqzcomp_qual.c:(.text+0x27f1): undefined reference to log'
fqzcomp_qual.c:(.text+0x287e): undefined reference to log' fqzcomp_qual.c:(.text+0x2925): undefined reference to log'
fqzcomp_qual.c:(.text+0x29b2): undefined reference to log' fqzcomp_qual.c:(.text+0x2a59): undefined reference to log'
../../lib/htslib/libhts.a(fqzcomp_qual.o):fqzcomp_qual.c:(.text+0x2b02): more undefined references to `log' follow
collect2: error: ld returned 1 exit status
make[1]: *** [all] Error 1
make: *** [lumpy_filter] Error 2

[gaom001]

Do not know what causes these two errors, please advise.