Home

Pipeline askoR - User Guide

Fabrice Legeai, Kevin Gazengel, Susete Alves C.
INRAE Centre Bretagne - Normandie, UMR 1349 iGEPP

ABSTRACT

AskoR is a pipeline for the analysis of gene expression data, using edgeR. Several steps are performed: data filters (cpm method), normalize this filtered data, look at the correlation of our data, run differential expression analysis, compare contrast, GO enrichment and co-expression.

Table of contents

• Input files description
• Initialize and load data
• Filtering data
• Normalize data
• Correlation
• DE analysis
• Basic comparisons
• GO Enrichment Analysis
• Coexpression and clustering