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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<!-- Google tag (gtag.js) -->
<script async src="https://www.googletagmanager.com/gtag/js?id=G-V2HNLQC0ND"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'G-V2HNLQC0ND');
</script>
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="theme-color" content="#e2e2e2">
<meta name="apple-mobile-web-app-status-bar-style" content="#e2e2e2">
<link rel="stylesheet" href="Stylesheets/style.css">
<link rel="stylesheet" href="ExternalLibraries/spectrum-2.0.8/spectrum.css">
<link rel="stylesheet" href="ExternalLibraries/jQuery/jquery-ui.css">
<link rel="stylesheet" href="ExternalLibraries/jQuery/dataTables/jquery.dataTables.min.css">
<link rel="stylesheet" href="ExternalLibraries/qtip2/jquery.qtip.min.css">
<link rel="stylesheet" href="ExternalLibraries/dataTables/buttons/buttons.dataTables.min.css">
<link rel="icon" href="favicon.ico" type="image/x-icon"/>
<title>MoLoTool — Sequence Motif Location Tool</title>
</head>
<body>
<div class="wrapper">
<nav id="first-level">
<ul class="nav">
<li class="nav__left">
<div id="molotool-container">
<span>MoLoTool</span>
<img src="img/MoLoTool.png" alt="MoLoTool">
</div>
<label for="motif-search">ID, family, gene</label>
<input id="motif-search" placeholder="SP1 or TBP-related factors">
<div class="suggestions absolute" hidden>
<div id="legend-container"></div>
<div id="motif-list"></div>
<div id="support-info" class="suggestion">
<span class="info motif-count"></span>
<!-- <a id="subfamily-button" class="interface-button">Show subfamily</a> -->
<span class="info model-collection"></span>
</div>
<div id="chosen-legend-container" class="empty chosen-motif-bar">
<a class="legend reset-chosen-motifs interface-button">Reset</a>
<div class="legend chosen-legend-heading">Chosen motifs</div>
</div>
<div id="chosen-motif-list" class="empty chosen-motif-bar"></div>
</div>
</li>
<li class="nav__right">
<div class="header-collection">
<label for="collection-select">Collection</label>
<select id="collection-select">
<option value="H12CORE">H12CORE</option>
<option value="H12RSNP">H12RSNP</option>
<option value="H12INVIVO">H12INVIVO</option>
<option value="H12INVITRO">H12INVITRO</option>
</select>
</div>
<div class="header-buttons">
<i id="error-report" class="material-icons md-dark">report</i>
<button id="demo-button">Demo</button>
<button id="reset-button">Reset</button>
<button id="help-button">Help</button>
</div>
</li>
</ul>
</nav>
<div id="second-level">
<div class="p-inputs">
<label for="pvalue_log">–log<sub>10</sub>(P-value)</label>
<input value="4" class="pvalue-input" id="pvalue_log">
<label for="pvalue_linear">P-value</label>
<input value="1.00e-4" class="pvalue-input" id="pvalue_linear">
<div class="slider">
<label for="pvalue_slider">
. 2 . 3 . 4 . 5 . 6
</label>
<input type="range" min="1.3" max="6" step="0.1" value="4" id="pvalue_slider">
</div>
</div>
<div id="chosen-motif-control" class="empty chosen-motif-bar"></div>
</div>
<div id="manual-text-input">
<table class="sequence-window">
<tr>
<td id="sequence-window__button-cell">
<button id="input_button">Submit</button>
</td>
<td id="sequence-window__heading">
<label for="input_textarea" class="sequence-window__label">
Nucleotide sequences, multi-fasta
</label>
<div class="right-tools-panel right-tool">
<div class="mode-select-container right-tool">
<label for="mode-select">Mode</label>
<select id="mode-select">
<option value="Multiple">Multiple</option>
<option value="Single">Single</option>
</select>
</div>
<a class="zoom-button link-button" href="#"></a>
</div>
</td>
</tr>
<tr>
<td id="sequence-window__tab-bar">
<div id="input_control">
<form id="upload-container" method="POST">
<a href="#" class="material-icons md-dark">file_upload</a>
<div>
<input id="file-input" type="file" name="file" multiple>
<label for="file-input">Chose a file</label>
<br>
<span>Or drag it here</span>
</div>
</form>
</div>
<div id="tab-bar"></div>
</td>
<td>
<textarea id="input_textarea" class="sequence-window__textarea" rows="6"
placeholder="Insert nucleotide sequences in fasta format here"></textarea>
<div id="output_textarea" class="sequence-window__textarea" hidden></div>
</td>
</tr>
</table>
</div>
<table id="motif-table" class="display cell-border compact"></table>
<!--<div id="download-app">
<a class="material-icons md-dark link-button"
href="https://github.com/nikonovxyz/MoLoTool/archive/refs/heads/master.zip"
download="MoLoTool">file_download</a>
</div>-->
</div>
<!-- External libraries -->
<script src="ExternalLibraries/jQuery/jquery-3.6.0.min.js"></script>
<script src="ExternalLibraries/jQuery/jquery-ui.min.js"></script>
<script src="ExternalLibraries/spectrum-2.0.8/spectrum.js"></script>
<script src="ExternalLibraries/clipboard.min.js"></script>
<script src="ExternalLibraries/qtip2/jquery.qtip.min.js"></script>
<script src="ExternalLibraries/dataTables/jquery.dataTables.min.js"></script>
<script src="ExternalLibraries/dataTables/buttons/dataTables.buttons.min.js"></script>
<script src="ExternalLibraries/dataTables/buttons/buttons.colVis.min.js"></script>
<script src="ExternalLibraries/dataTables/buttons/buttons.html5.min.js"></script>
<script src="ExternalLibraries/dataTables/buttons/AdditionalFeatures/pdfmake.min.js"></script>
<script src="ExternalLibraries/dataTables/buttons/AdditionalFeatures/jszip.min.js"></script>
<script src="ExternalLibraries/dataTables/buttons/AdditionalFeatures/vfs_fonts.js"></script>
<script src="JavaScript/UI/uiElements/inputButton.js"></script>
<script src="JavaScript/UI/uiElements/zoomButton.js"></script>
<script src="JavaScript/UI/uiElements/pValueInput.js"></script>
<script src="JavaScript/inputParsing/inputParsing.js"></script>
<script src="JavaScript/inputParsing/fileUploader.js"></script>
<script src="JavaScript/inputParsing/inputErrors.js"></script>
<script src="JavaScript/renderOutput/digitGuidance.js"></script>
<script src="JavaScript/motifPicker/motifPicker.js"></script>
<script src="JavaScript/UI/uiElements/resetChosenMotifs.js"></script>
<!-- <script src="JavaScript/UI/uiElements/subfamilyButton.js"></script> -->
<script src="JavaScript/motifPicker/inputState.js"></script>
<script src="JavaScript/motifPicker/motifSearch.js"></script>
<script src="JavaScript/UI/uiButtons.js"></script>
<script src="JavaScript/UI/uiElements/collectionSettingsButtons.js"></script>
<script src="JavaScript/UI/uiElements/demoButton.js"></script>
<script src="JavaScript/UI/uiElements/resetButton.js"></script>
<script src="JavaScript/motifHandler/motifHandler.js"></script>
<script src="JavaScript/dataLibrary/motifLibrary.js"></script>
<script src="JavaScript/dataLibrary/sequenceLibrary.js"></script>
<script src="JavaScript/motifHandler/motif.js"></script>
<script src="JavaScript/motifTable/motifTable.js"></script>
<script src="JavaScript/motifTable/features.js"></script>
<script src="JavaScript/UI/colorPicker.js"></script>
<script src="JavaScript/renderOutput/segmentation.js"></script>
<script src="JavaScript/motifHandler/sequenceConstructor.js"></script>
<script src="JavaScript/renderOutput/chosenMotifHighlight.js"></script>
<script src="JavaScript/renderTabs/renderTabs.js"></script>
<script src="JavaScript/renderTabs/resultTabsStates.js"></script>
<script src="JavaScript/renderTabs/clipboardCopy.js"></script>
<script src="JavaScript/renderTabs/singleModeTextGenerator.js"></script>
<script src="JavaScript/renderTabs/comparisonMode.js"></script>
<script src="JavaScript/UI/uiElements/modeSwitcher.js"></script>
<script src="JavaScript/UI/uiElements/helpButton.js"></script>
<script src="JavaScript/UI/keyboardNavigation.js"></script>
<script src="JavaScript/errorHandler.js"></script>
<script src="JavaScript/UI/uiElements/moLoToolInfo.js"></script>
<script src="JavaScript/UI/uiBuilder.js"></script>
</body>
</html>