README.rst

WONAMBI

Package to analysis EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

Features

• Can read files of format:
  • Axon (.abf, ABF2 only)
  • Blackrock (.nev, .ns2, .ns3, .ns5)
  • BCI2000 (.dat)
  • European Data Format (.edf)
  • EGI MFF (.mff)
  • Fieldtrip (.mat)
  • mne FIFF (.fiff)
• Interface for Sleep Scoring
• Computes frequency analysis (spectrogram), time-frequency analysis (Morlet wavelet)
• Pure Python

Installation

Install wonambi by running:

pip install wonambi

See Installation for details

If you want to scroll recordings and do some sleep scoring (requires PyQt5)

wonambi

Run it!

From the command line, simply type:

wonambi

To open a dataset directly, add the full path to the file you want to open:

wonambi /home/me/sleep_recordings.edf

Documentation

See Documentation

Change Log

See Change Log

Requirements

• Python 3.6
• numpy
• scipy

Optional Requirements

• PyQt5 (optional for sleep scoring GUI)
• nibabel (optional to read freesurfer)
• h5py (optional to read FieldTrip Matlab files)

Status

License

The project is licensed under the GPLv3 license. Other licenses available upon request.