Move to avro objects instead of classes #21
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adgirish
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Oct 25, 2017
adgirish
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Oct 30, 2017
…omics#32) * Added python binding boilerplate * more boilerplate for bindings * adding todo file for java wrapper * laying out more skeleton code * Implemented gnocchiSession python object * Working on Java Wrapper for Bindings adgirish: * adding todo file for java wrapper * laying out more skeleton code * added empty interfaces * todo add method comments * added empty interfaces * todo add method comments * Bindings (#7) * adding todo file for java wrapper * laying out more skeleton code * added empty interfaces * todo add method comments * added empty interfaces * todo add method comments * added pom.xml * Fix Project Modules and pom files * adding todo file for java wrapper * laying out more skeleton code * added empty interfaces * todo add method comments * added empty interfaces * todo add method comments * added pom.xml * changing reference in pom.xml * changing reference in pom.xml v2 * added python pointer wrappers * Created and Modified pom files * Updated JavaGnocchiSession and Refactor * make file for gnocchi-python * Added assembly and packaging * Bindingsv3 (#12) * v1 * resolved import issues, fixed JavaGnocchiSession, corrected BetterPhenotype * Bindingsv3 (#13) * v1 * resolved import issues, fixed JavaGnocchiSession, corrected BetterPhenotype * added test to verify java wrappers * added test to verify java wrappers * resolve conflicts - 2 * remove redundant makefile * updated packing and dependencies * fixes maven build * fixed issues with assembly build * updated load genotypes method * SparkSession Creation fix for compatibility with pySpark (bigdatagenomics#21) * rebasing onto nate's branch and moving remaining packages to org.bdgenomics * resolve dependency issues caused by refactor * Documentation for JVM and Python Gnocchi Session * cleaning unused dependencies * adding JavaGnocchiSession tests (bigdatagenomics#22) * remove unused dependencies * resolved nates comments
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Avro Association is no longer used, and class Association is used instead.
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