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Allow using aligned reads as input #78

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fnothaft opened this issue Jul 15, 2015 · 0 comments
Open

Allow using aligned reads as input #78

fnothaft opened this issue Jul 15, 2015 · 0 comments

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@fnothaft
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Extends from #77. We should treat a read that is aligned to a transcript as "compatible" with that transcript. We may need a reverse index for this; tbd.
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@fnothaft