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Cache reference downloads / index builds, provide snakemake profile with default cache dir #515

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tedil opened this issue Jun 3, 2024 · 1 comment
Open

Cache reference downloads / index builds, provide snakemake profile with default cache dir #515

tedil opened this issue Jun 3, 2024 · 1 comment
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tedil commented Jun 3, 2024

In order to make the snappy-pipeline more flexible and portable, when #512 is done, the reference may be downloaded or linked automatically, dependent indices can also be built or linked automatically, and the results can be cached in the SNAKEMAKE_OUTPUT_CACHE to be made available between workflows.
@tedil tedil self-assigned this Jun 3, 2024
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tedil commented Jun 3, 2024

This also helps with reproducibility, because the way to obtain such data is included in the workflow.

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