diff --git a/sbin/conf-to-vars b/sbin/conf-to-vars index e5e045bd..d0128a47 100755 --- a/sbin/conf-to-vars +++ b/sbin/conf-to-vars @@ -1,7 +1,5 @@ #!/usr/bin/env python -from __future__ import print_function - __doc__ = """ Print conf file as variable assignments. diff --git a/src/hgvs/__init__.py b/src/hgvs/__init__.py index 81704bd6..5b821237 100644 --- a/src/hgvs/__init__.py +++ b/src/hgvs/__init__.py @@ -49,8 +49,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import re import sys diff --git a/src/hgvs/alignmentmapper.py b/src/hgvs/alignmentmapper.py index ccf9b8fc..badedef3 100644 --- a/src/hgvs/alignmentmapper.py +++ b/src/hgvs/alignmentmapper.py @@ -27,8 +27,6 @@ # -from __future__ import absolute_import, division, print_function, unicode_literals - from bioutils.coordinates import strand_int_to_pm from six.moves import range diff --git a/src/hgvs/assemblymapper.py b/src/hgvs/assemblymapper.py index dcc5e0a6..e14e07ba 100644 --- a/src/hgvs/assemblymapper.py +++ b/src/hgvs/assemblymapper.py @@ -1,7 +1,5 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import hgvs diff --git a/src/hgvs/config.py b/src/hgvs/config.py index 75790992..175043d7 100644 --- a/src/hgvs/config.py +++ b/src/hgvs/config.py @@ -27,8 +27,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import re from configparser import ConfigParser, ExtendedInterpolation diff --git a/src/hgvs/dataproviders/interface.py b/src/hgvs/dataproviders/interface.py index fcdbd563..838ba080 100644 --- a/src/hgvs/dataproviders/interface.py +++ b/src/hgvs/dataproviders/interface.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import abc import os diff --git a/src/hgvs/dataproviders/seqfetcher.py b/src/hgvs/dataproviders/seqfetcher.py index f9d1870e..56a8823c 100644 --- a/src/hgvs/dataproviders/seqfetcher.py +++ b/src/hgvs/dataproviders/seqfetcher.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import os diff --git a/src/hgvs/dataproviders/uta.py b/src/hgvs/dataproviders/uta.py index 2a9c1342..609ed88a 100644 --- a/src/hgvs/dataproviders/uta.py +++ b/src/hgvs/dataproviders/uta.py @@ -4,8 +4,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import contextlib import inspect import logging diff --git a/src/hgvs/decorators/deprecated.py b/src/hgvs/decorators/deprecated.py index a7f375d1..cc64f2b4 100644 --- a/src/hgvs/decorators/deprecated.py +++ b/src/hgvs/decorators/deprecated.py @@ -4,8 +4,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import collections import warnings diff --git a/src/hgvs/decorators/lru_cache.py b/src/hgvs/decorators/lru_cache.py index fe752604..6f3e50c3 100644 --- a/src/hgvs/decorators/lru_cache.py +++ b/src/hgvs/decorators/lru_cache.py @@ -11,8 +11,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - from collections import namedtuple from functools import update_wrapper from threading import RLock diff --git a/src/hgvs/edit.py b/src/hgvs/edit.py index a6b95f7a..694dc99c 100644 --- a/src/hgvs/edit.py +++ b/src/hgvs/edit.py @@ -9,8 +9,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import attr import six from bioutils.sequences import aa1_to_aa3, aa_to_aa1 diff --git a/src/hgvs/exceptions.py b/src/hgvs/exceptions.py index a9e5fc47..c5d21040 100644 --- a/src/hgvs/exceptions.py +++ b/src/hgvs/exceptions.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - class HGVSError(Exception): pass diff --git a/src/hgvs/hgvsposition.py b/src/hgvs/hgvsposition.py index eb9a16ca..14e3c25a 100644 --- a/src/hgvs/hgvsposition.py +++ b/src/hgvs/hgvsposition.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import attr diff --git a/src/hgvs/intervalmapper.py b/src/hgvs/intervalmapper.py index 3669fca6..ea15aba3 100644 --- a/src/hgvs/intervalmapper.py +++ b/src/hgvs/intervalmapper.py @@ -42,8 +42,6 @@ start_i and minimal end_i. """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import re diff --git a/src/hgvs/location.py b/src/hgvs/location.py index 1b3295c7..0c21dd94 100644 --- a/src/hgvs/location.py +++ b/src/hgvs/location.py @@ -15,8 +15,6 @@ * :class:`Interval` -- an interval of Positions """ -from __future__ import absolute_import, division, print_function, unicode_literals - from functools import total_ordering import attr diff --git a/src/hgvs/normalizer.py b/src/hgvs/normalizer.py index b8c3c09a..ebe731ba 100644 --- a/src/hgvs/normalizer.py +++ b/src/hgvs/normalizer.py @@ -2,8 +2,6 @@ """hgvs.normalizer """ -from __future__ import absolute_import, division, print_function, unicode_literals - import copy import logging diff --git a/src/hgvs/parser.py b/src/hgvs/parser.py index 9e26220a..101927e8 100644 --- a/src/hgvs/parser.py +++ b/src/hgvs/parser.py @@ -4,8 +4,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import copy import logging import re diff --git a/src/hgvs/posedit.py b/src/hgvs/posedit.py index 07cc981e..b841da2f 100644 --- a/src/hgvs/posedit.py +++ b/src/hgvs/posedit.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import attr from hgvs.enums import ValidationLevel diff --git a/src/hgvs/projector.py b/src/hgvs/projector.py index ac827689..74679087 100644 --- a/src/hgvs/projector.py +++ b/src/hgvs/projector.py @@ -4,8 +4,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import copy import hgvs diff --git a/src/hgvs/sequencevariant.py b/src/hgvs/sequencevariant.py index c49e29ea..698ab373 100644 --- a/src/hgvs/sequencevariant.py +++ b/src/hgvs/sequencevariant.py @@ -1,8 +1,6 @@ # -*- coding: utf-8 -*- """ represents simple sequence-based variants """ -from __future__ import absolute_import, division, print_function, unicode_literals - import attr import hgvs.variantmapper diff --git a/src/hgvs/shell.py b/src/hgvs/shell.py index 2d4da673..234219f4 100755 --- a/src/hgvs/shell.py +++ b/src/hgvs/shell.py @@ -2,8 +2,6 @@ """start IPython shell with hgvs initialized. Intended to be used for experimenting, debugging, and generating bug reports.""" -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import os diff --git a/src/hgvs/transcriptmapper.py b/src/hgvs/transcriptmapper.py index 6e622305..09210e0f 100644 --- a/src/hgvs/transcriptmapper.py +++ b/src/hgvs/transcriptmapper.py @@ -4,8 +4,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging from bioutils.coordinates import strand_int_to_pm diff --git a/src/hgvs/utils/__init__.py b/src/hgvs/utils/__init__.py index 58a9730e..c1a9b5a6 100644 --- a/src/hgvs/utils/__init__.py +++ b/src/hgvs/utils/__init__.py @@ -1,7 +1,5 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import re diff --git a/src/hgvs/utils/altseq_to_hgvsp.py b/src/hgvs/utils/altseq_to_hgvsp.py index 699fe9cf..99cd141b 100644 --- a/src/hgvs/utils/altseq_to_hgvsp.py +++ b/src/hgvs/utils/altseq_to_hgvsp.py @@ -5,8 +5,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - from six.moves import range import hgvs diff --git a/src/hgvs/utils/altseqbuilder.py b/src/hgvs/utils/altseqbuilder.py index ccf6f518..9c00dc98 100644 --- a/src/hgvs/utils/altseqbuilder.py +++ b/src/hgvs/utils/altseqbuilder.py @@ -6,8 +6,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import math diff --git a/src/hgvs/utils/context.py b/src/hgvs/utils/context.py index 5a8a7dfa..a29fe3eb 100644 --- a/src/hgvs/utils/context.py +++ b/src/hgvs/utils/context.py @@ -23,8 +23,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import re from bioutils.sequences import complement diff --git a/src/hgvs/utils/norm.py b/src/hgvs/utils/norm.py index c67a807b..8f8497f3 100644 --- a/src/hgvs/utils/norm.py +++ b/src/hgvs/utils/norm.py @@ -5,8 +5,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - from collections import namedtuple from six.moves import range diff --git a/src/hgvs/utils/orderedenum.py b/src/hgvs/utils/orderedenum.py index e78b14dd..2ce7db93 100644 --- a/src/hgvs/utils/orderedenum.py +++ b/src/hgvs/utils/orderedenum.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - from enum import Enum diff --git a/src/hgvs/validator.py b/src/hgvs/validator.py index 67b78d90..bc0ca8ed 100644 --- a/src/hgvs/validator.py +++ b/src/hgvs/validator.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import logging import hgvs diff --git a/src/hgvs/variantmapper.py b/src/hgvs/variantmapper.py index 45e5da0c..63bdfd3d 100644 --- a/src/hgvs/variantmapper.py +++ b/src/hgvs/variantmapper.py @@ -3,8 +3,6 @@ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import copy import logging diff --git a/tests/bin/build-ref-repl b/tests/bin/build-ref-repl index 16927532..0e902b31 100755 --- a/tests/bin/build-ref-repl +++ b/tests/bin/build-ref-repl @@ -1,8 +1,6 @@ #!/usr/bin/env python # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - """Builds reference replacement test sets""" import logging diff --git a/tests/bin/connpool-stress-test b/tests/bin/connpool-stress-test index 516a71c6..0f04e094 100755 --- a/tests/bin/connpool-stress-test +++ b/tests/bin/connpool-stress-test @@ -10,8 +10,6 @@ With 0.4.5a4.post0, it runs until terminated (several runs of at least two minut https://github.com/biocommons/hgvs/issues/321/ """ -from __future__ import absolute_import, division, print_function, unicode_literals - import gzip import logging import random diff --git a/tests/fx-test/test_variant_length.py b/tests/fx-test/test_variant_length.py index 54d641d1..5b42e9a1 100644 --- a/tests/fx-test/test_variant_length.py +++ b/tests/fx-test/test_variant_length.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/issues/test_02xx.py b/tests/issues/test_02xx.py index b804dbb3..3a631ee6 100644 --- a/tests/issues/test_02xx.py +++ b/tests/issues/test_02xx.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/issues/test_03xx.py b/tests/issues/test_03xx.py index 349584af..e030ced8 100644 --- a/tests/issues/test_03xx.py +++ b/tests/issues/test_03xx.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/issues/test_04xx.py b/tests/issues/test_04xx.py index 221be5d3..47e165ba 100644 --- a/tests/issues/test_04xx.py +++ b/tests/issues/test_04xx.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/issues/test_05xx.py b/tests/issues/test_05xx.py index 0679b81c..962d75b8 100644 --- a/tests/issues/test_05xx.py +++ b/tests/issues/test_05xx.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/support/crosschecker.py b/tests/support/crosschecker.py index cd428eea..68d1510e 100644 --- a/tests/support/crosschecker.py +++ b/tests/support/crosschecker.py @@ -1,5 +1,3 @@ -from __future__ import absolute_import, division, print_function, unicode_literals - import itertools from six.moves import map diff --git a/tests/support/mock_input_source.py b/tests/support/mock_input_source.py index 184fbb49..5378aded 100644 --- a/tests/support/mock_input_source.py +++ b/tests/support/mock_input_source.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import csv # Mock test input source diff --git a/tests/test_clinvar.py b/tests/test_clinvar.py index 64d6b621..942d931f 100644 --- a/tests/test_clinvar.py +++ b/tests/test_clinvar.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import csv import gzip import io diff --git a/tests/test_hgvs_alignmentmapper.py b/tests/test_hgvs_alignmentmapper.py index bdff4e81..341cc2ef 100644 --- a/tests/test_hgvs_alignmentmapper.py +++ b/tests/test_hgvs_alignmentmapper.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_assemblymapper.py b/tests/test_hgvs_assemblymapper.py index d2730104..460ea299 100644 --- a/tests/test_hgvs_assemblymapper.py +++ b/tests/test_hgvs_assemblymapper.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_dataproviders_uta.py b/tests/test_hgvs_dataproviders_uta.py index bf7ec847..f6e785cf 100644 --- a/tests/test_hgvs_dataproviders_uta.py +++ b/tests/test_hgvs_dataproviders_uta.py @@ -1,8 +1,6 @@ # -*- coding: utf-8 -*- """Tests uta postgresql client""" -from __future__ import absolute_import, division, print_function, unicode_literals - import os import re import unittest diff --git a/tests/test_hgvs_edit.py b/tests/test_hgvs_edit.py index 105be9b4..a5e49d5b 100644 --- a/tests/test_hgvs_edit.py +++ b/tests/test_hgvs_edit.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import unittest import pytest diff --git a/tests/test_hgvs_grammar.py b/tests/test_hgvs_grammar.py index 7c904a71..7492fe2c 100644 --- a/tests/test_hgvs_grammar.py +++ b/tests/test_hgvs_grammar.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import unittest import pytest diff --git a/tests/test_hgvs_grammar_full.py b/tests/test_hgvs_grammar_full.py index 5a0cd78c..d515325c 100644 --- a/tests/test_hgvs_grammar_full.py +++ b/tests/test_hgvs_grammar_full.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import pprint import re diff --git a/tests/test_hgvs_hgvsposition.py b/tests/test_hgvs_hgvsposition.py index 10ba0380..6883ffdb 100644 --- a/tests/test_hgvs_hgvsposition.py +++ b/tests/test_hgvs_hgvsposition.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import unittest import pytest diff --git a/tests/test_hgvs_location.py b/tests/test_hgvs_location.py index 2e75f2e8..3bc4e2db 100644 --- a/tests/test_hgvs_location.py +++ b/tests/test_hgvs_location.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import unittest import pytest diff --git a/tests/test_hgvs_normalizer.py b/tests/test_hgvs_normalizer.py index 65d9ab91..fbae6e99 100644 --- a/tests/test_hgvs_normalizer.py +++ b/tests/test_hgvs_normalizer.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_parser.py b/tests/test_hgvs_parser.py index 5e296c43..a8b83046 100644 --- a/tests/test_hgvs_parser.py +++ b/tests/test_hgvs_parser.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import hashlib import os import pprint diff --git a/tests/test_hgvs_posedit.py b/tests/test_hgvs_posedit.py index a119f4f6..8f50060b 100644 --- a/tests/test_hgvs_posedit.py +++ b/tests/test_hgvs_posedit.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import unittest import pytest diff --git a/tests/test_hgvs_projector.py b/tests/test_hgvs_projector.py index 1c22357b..a7701d6a 100644 --- a/tests/test_hgvs_projector.py +++ b/tests/test_hgvs_projector.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_sequencevariant.py b/tests/test_hgvs_sequencevariant.py index a6ea6bd2..40d4bbbc 100644 --- a/tests/test_hgvs_sequencevariant.py +++ b/tests/test_hgvs_sequencevariant.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_validator.py b/tests/test_hgvs_validator.py index 59dc6f7a..0726b013 100644 --- a/tests/test_hgvs_validator.py +++ b/tests/test_hgvs_validator.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_variantmapper.py b/tests/test_hgvs_variantmapper.py index 63a61ce6..795770bb 100644 --- a/tests/test_hgvs_variantmapper.py +++ b/tests/test_hgvs_variantmapper.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_variantmapper_cp_altseqbuilder.py b/tests/test_hgvs_variantmapper_cp_altseqbuilder.py index 7c4ade40..21f16cb0 100644 --- a/tests/test_hgvs_variantmapper_cp_altseqbuilder.py +++ b/tests/test_hgvs_variantmapper_cp_altseqbuilder.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import unittest diff --git a/tests/test_hgvs_variantmapper_cp_real.py b/tests/test_hgvs_variantmapper_cp_real.py index 5bd4c601..64419e43 100644 --- a/tests/test_hgvs_variantmapper_cp_real.py +++ b/tests/test_hgvs_variantmapper_cp_real.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import re import unittest diff --git a/tests/test_hgvs_variantmapper_cp_sanity.py b/tests/test_hgvs_variantmapper_cp_sanity.py index 02a01c73..6367d6c5 100644 --- a/tests/test_hgvs_variantmapper_cp_sanity.py +++ b/tests/test_hgvs_variantmapper_cp_sanity.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - # # Tests for conversion of hgvs tags # diff --git a/tests/test_hgvs_variantmapper_gcp.py b/tests/test_hgvs_variantmapper_gcp.py index 368d8f42..d59eb588 100644 --- a/tests/test_hgvs_variantmapper_gcp.py +++ b/tests/test_hgvs_variantmapper_gcp.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import re import sys diff --git a/tests/test_hgvs_variantmapper_near_discrepancies.py b/tests/test_hgvs_variantmapper_near_discrepancies.py index 84bed3d8..7a663222 100644 --- a/tests/test_hgvs_variantmapper_near_discrepancies.py +++ b/tests/test_hgvs_variantmapper_near_discrepancies.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -from __future__ import absolute_import, division, print_function, unicode_literals - import os import pytest