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test-mouse.html
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test-mouse.html
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<!DOCTYPE html>
<html>
<head>
<style>
</style>
<title>Mouse NCBIm37 :: Dalliance</title>
<script language="javascript" src="node_modules/es6-promise/dist/promise-0.1.2.js"></script>
<script language="javascript" src="js/bam.js"></script>
<script language="javascript" src="js/bigwig.js"></script>
<script language="javascript" src="js/das.js"></script>
<script language="javascript" src="js/spans.js"></script>
<script language="javascript" src="js/utils.js"></script>
<script language="javascript" src="js/cbrowser.js"></script>
<script language="javascript" src="js/feature-popup.js"></script>
<script language="javascript" src="js/tier.js"></script>
<script language="javascript" src="js/features.js"></script>
<script language="javascript" src="js/color.js"></script>
<script language="javascript" src="js/feature-draw.js"></script>
<script language="javascript" src="js/sequence-draw.js"></script>
<script language="javascript" src="js/domui.js"></script>
<script language="javascript" src="js/track-adder.js"></script>
<script language="javascript" src="js/chainset.js"></script>
<script language="javascript" src="js/version.js"></script>
<script language="javascript" src="js/sha1.js"></script>
<script language="javascript" src="js/sample.js"></script>
<script language="javascript" src="js/kspace.js"></script>
<script language="javascript" src="js/bin.js"></script>
<script language="javascript" src="js/twoBit.js"></script>
<script language="javascript" src="js/thub.js"></script>
<script language="javascript" src="js/svg-export.js"></script>
<script language="javascript" src="node_modules/jszlib/js/inflate.js"></script>
<script language="javascript" src="js/browser-ui.js"></script>
<script language="javascript" src="js/glyphs.js"></script>
<script language="javascript" src="js/session.js"></script>
<script language="javascript" src="js/jbjson.js"></script>
<script language="javascript" src="js/sourceadapters.js"></script>
<script language="javascript" src="polyfills/html5slider.js"></script>
<script language="javascript" src="js/ensembljson.js"></script>
<script language="javascript" src="js/overlay.js"></script>
<script language="javascript" src="js/tier-actions.js"></script>
<script language="javascript" src="js/tier-edit.js"></script>
<script language="javascript" src="js/search.js"></script>
<script language="javascript" src="js/tabix.js"></script>
<script language="javascript" src="js/tabix-source.js"></script>
<script language="javascript" src="js/bigtab.js"></script>
<script language="javascript" src="js/memstore.js"></script>
<script language="javascript" src="js/vcf.js"></script>
<script language="javascript" src="js/bedwig.js"></script>
<script language="javascript" src="js/probe.js"></script>
<script language="javascript" src="js/trix.js"></script>
<script language="javascript" src="js/export-ui.js"></script>
<script language="javascript" src="js/export-config.js"></script>
<script language="javascript" src="js/lh3utils.js"></script>
<script language="javascript" src="js/svg-utils.js"></script>
<script language="javascript" src="js/numformats.js"></script>
<script language="javascript" src="js/cigar.js"></script>
<script language="javascript">
new Browser({
chr: '19',
viewStart: 30000000,
viewEnd: 30030000,
cookieKey: 'mouse',
coordSystem: {
speciesName: 'Mouse',
taxon: 10090,
auth: 'NCBIM',
version: 37
},
chains: {
mm8ToMm9: new Chainset('http://www.derkholm.net:8080/das/mm8ToMm9/', 'NCBIM36', 'NCBIM37',
{
speciesName: 'Mouse',
taxon: 10090,
auth: 'NCBIM',
version: 36
})
},
sources: [{name: 'Genome',
uri: 'http://www.derkholm.net:9080/das/mm9comp/',
desc: 'Mouse reference genome build NCBIm37',
tier_type: 'sequence',
provides_entrypoints: true},
{name: 'Genes',
desc: 'Gene structures from Ensembl 58',
uri: 'http://www.derkholm.net:8080/das/mmu_58_37k/',
collapseSuperGroups: true,
provides_karyotype: true,
provides_search: true},
{name: 'Repeats',
desc: 'Repeat annotation from Ensembl 58',
uri: 'http://www.derkholm.net:8080/das/mmu_58_37k/',
stylesheet_uri: 'http://www.derkholm.net/dalliance-test/stylesheets/mouse-repeats.xml'},
{name: 'CpG Density',
desc: 'CpG observed/expected ratio',
uri: 'http://www.derkholm.net:9080/das/mm9comp/',
stylesheet_uri: 'http://www.derkholm.net/dalliance-test/stylesheets/cpg.xml'}],
searchEndpoint: new DASSource('http://www.derkholm.net:8080/das/mmu_58_37k/'),
karyoEndpoint: new DASSource('http://www.derkholm.net:8080/das/mmu_58_37k/'),
browserLinks: {
Ensembl: 'http://www.ensembl.org/Mus_musculus/Location/View?r=${chr}:${start}-${end}',
UCSC: 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr${chr}:${start}-${end}'
}
});
</script>
</head>
<body>
<div id='svgHolder'>Dalliance genome browser goes here. Unless you have an ancient web browser or something.</div>
</body>
</html>