Releases: biolink/biolink-model
Releases · biolink/biolink-model
v3.2.0
What's Changed
- add entity as a domain of name by @sierra-moxon in #1208
- Fix the regex pattern used to check for the biolink:category CURIE by @vemonet in #1213
- Add SHACL gen to the
Makefile
by @vemonet in #1214 - update doc to use curie form of predicates by @sierra-moxon in #1209
- make type slot multivalued by @vincentvialard in #1212
- remove cycle in permissible values, fixes #1215, remove degradation from abundance hierarchy in permissible values, fixes #1206 by @sierra-moxon in #1217
- Create
publication type
slot to fix SHACL validation and avoid confusion by @vemonet in #1218 - add grouping class for qualifiers, add subset translator, fix range o… by @sierra-moxon in #1219
Full Changelog: v3.1.2...v3.2.0
v3.1.2
What's Changed
- Removing stray list by @cbizon in #1189
- fix
acts upstream
predicate hierarchy by @vincentvialard in #1190 - fix
caused by
predicate hierarchy by @vincentvialard in #1191 - rename inverse of
capable of
predicate by @vincentvialard in #1192 - Update predicate_mapping.yaml by @cbizon in #1193
- Update predicate_mapping.yaml by @cbizon in #1194
- fixes #1199 by @sierra-moxon in #1201
- fixes #863, add loss_of_function and gain_of_function to form_or_variant qualifier enumeration by @sierra-moxon in #1202
- update dependencies via dependabot by @sierra-moxon in #1203
- fixes #1196, #1187, #1186 update domain and range of regulates hierarchy in response to the spl… by @sierra-moxon in #1197
Full Changelog: v3.1.1...v3.1.2
v3.1.1
What's Changed
- Syntax errors in example docs by @sierra-moxon in #1149
- Fixing snomed by @cmungall in #1153
- remove underscores from synonym slots by @sierra-moxon in #1172
- change semmeddb mapping case/spelling and SEMMEDDB:ASSOCIATED_WITH ma… by @colleenXu in #1169
- add fequency quantifier to the phenotypic association classes fixes #1175 by @sierra-moxon in #1174
- add an ordered prefix list per class fixes #1173 by @sierra-moxon in #1176
- fixed inverted domain/range for predicates by @vincentvialard in #1178
- fixed typo in alias of 'in taxon' by @vincentvialard in #1177
- Add original subject, original predicate and original object to Association by @kevinschaper in #1182
- fixes #1170, fixes #1167, fixes #1168, fixes #1180, fixes #1166 by @sierra-moxon in #1183
- Fix some opposite predicates should be inverses by @vincentvialard in #1179
- removing inverse and opposite from subclass, superclass predicates by @sierra-moxon in #1184
- fixing errors in id prefixes generator, removing csv generator, fixin… by @sierra-moxon in #1185
New Contributors
- @vincentvialard made their first contribution in #1178
Full Changelog: v3.1.0...v3.1.1
v3.1.0
What's Changed
- Some (new?) inverse predicates are missing their is_a property connection to the predicate hierarchy by @RichardBruskiewich in #1095
- Updating biolink-model.yaml to include new classes for epigenomic ent… by @beasleyjonm in #1102
- fixes #1111 - exposure_event is_a: ontology_class by @sierra-moxon in #1113
- fixes #1101, fixes #1100, fixes #1098 add subject of investigation mixin to many different organism level c… by @sierra-moxon in #1115
- Association and Predicates for Gene to Gene Family relationships by @RichardBruskiewich in #945
- Supporting publications fixes #1107 by @sierra-moxon in #1114
- remove obsolete GAMMA predicates by @EvanDietzMorris in #1117
- Move deprecated mappings to examples/biolink3_migration/predicate_mappings.yaml by @sierra-moxon in #1116
- fixes #1088 - make macromolecular complex a class, add mappings by @sierra-moxon in #1125
- fixes #1096 - add Study, Variable, CommonDataElement by @sierra-moxon in #1126
- fixes #1124 adding canonical tags to response predicates, deprecating increase/de… by @sierra-moxon in #1127
- updating orphanet prefix, fixes #1122 by @sierra-moxon in #1128
- fixes #1119 by @sierra-moxon in #1129
- remove mixin tag from regulates, fixes #1094 by @sierra-moxon in #1130
- adding documentation and examples on qualifiers partially fixes #1133 by @sierra-moxon in #1134
- fixing unknown prefix artifact regeneration error by @sierra-moxon in #1135
- update doc gen to not include yamlfile by @sierra-moxon in #1136
- replace spaces with underscores in enumerations by @sierra-moxon in #1137
- add infores catalog as a nodes tsv file by @sierra-moxon in #1139
- fixes #1132 : include mappings and id prefixes for "chemical role" by @sierra-moxon in #1142
- refactor Sequence Variant to make it more clear that CNVs are a sublc… by @sierra-moxon in #1141
- refactor helpdesk template to include contact information, fixes #1138 by @sierra-moxon in #1146
New Contributors
- @beasleyjonm made their first contribution in #1102
- @EvanDietzMorris made their first contribution in #1117
Full Changelog: v3.0.3...v3.1.0
v3.0.3
What's Changed
- add UMLS as a prefix for organism fixes #1084 by @sierra-moxon in #1086
- Mappings for KGX category assignment fixes #1082 by @sierra-moxon in #1087
- Migrate mappings qualifiers by @sierra-moxon in #1089
- add missing inverses or missing symmetric tag by @sierra-moxon in #1090
Full Changelog: v3.0.2...v3.0.3
v3.0.2
What's Changed
- add side-effect, deprecate causes adverse event fixes #1051 by @sierra-moxon in #1057
- deprecate original knowledge source? by @sierra-moxon in #1079
- Activity or abundance by @sierra-moxon in #1083
Full Changelog: v3.0.1...v3.0.2
v3.0.1
What's Changed
- Trapi examples by @sierra-moxon in #1067
- S-P-O annotation of annotation of diseases or phenotypic features with mode of inheritance. by @RichardBruskiewich in #1068
- fixes #1075, add mappings to organism, virus, and cellular organism by @sierra-moxon in #1076
- add exact, narrow, broad, related synonym slots to the model fixes #1073 by @sierra-moxon in #1077
- adding supporting data properties, fixes #1074 by @sierra-moxon in #1078
- fix typos in enumerated gene->chemical terms by @sierra-moxon in #1080
Full Changelog: v3.0.0...v3.0.1
rc-deprecated-predicates
Full Changelog: v3.0.1...deprecated-predicates
v2.4.8
special August QotM release for Translator
v3.0.0
What's Changed
- fix treated_by inverse predicate hiearchy fixes #1048 by @sierra-moxon in #1056
- add SPDI fixes #1042 by @sierra-moxon in #1058
- biolink-3.0 fixes #991 fixes #1049 by @sierra-moxon in #1028
- Supporting study fixes #1050 by @sierra-moxon in #1059
- refactoring w/re to interaction conversation, add examples for 3.0 qualifiers by @sierra-moxon in #1060
- remove older deprecations by @sierra-moxon in #1061
- Minor fixes/changes to new content in biolink-model.yaml by @mbrush in #1062
- bug fix likelihood hierarchy by @sierra-moxon in #1063
Full Changelog: v2.4.7...v3.0.0