v3.2.0

What's Changed

• add entity as a domain of name by @sierra-moxon in #1208
• Fix the regex pattern used to check for the biolink:category CURIE by @vemonet in #1213
• Add SHACL gen to the Makefile by @vemonet in #1214
• update doc to use curie form of predicates by @sierra-moxon in #1209
• make type slot multivalued by @vincentvialard in #1212
• remove cycle in permissible values, fixes #1215, remove degradation from abundance hierarchy in permissible values, fixes #1206 by @sierra-moxon in #1217
• Create publication type slot to fix SHACL validation and avoid confusion by @vemonet in #1218
• add grouping class for qualifiers, add subset translator, fix range o… by @sierra-moxon in #1219

Full Changelog: v3.1.2...v3.2.0

v3.1.2

What's Changed

• Removing stray list by @cbizon in #1189
• fix acts upstream predicate hierarchy by @vincentvialard in #1190
• fix caused by predicate hierarchy by @vincentvialard in #1191
• rename inverse of capable of predicate by @vincentvialard in #1192
• Update predicate_mapping.yaml by @cbizon in #1193
• Update predicate_mapping.yaml by @cbizon in #1194
• fixes #1199 by @sierra-moxon in #1201
• fixes #863, add loss_of_function and gain_of_function to form_or_variant qualifier enumeration by @sierra-moxon in #1202
• update dependencies via dependabot by @sierra-moxon in #1203
• fixes #1196, #1187, #1186 update domain and range of regulates hierarchy in response to the spl… by @sierra-moxon in #1197

Full Changelog: v3.1.1...v3.1.2

v3.1.1

What's Changed

• Syntax errors in example docs by @sierra-moxon in #1149
• Fixing snomed by @cmungall in #1153
• remove underscores from synonym slots by @sierra-moxon in #1172
• change semmeddb mapping case/spelling and SEMMEDDB:ASSOCIATED_WITH ma… by @colleenXu in #1169
• add fequency quantifier to the phenotypic association classes fixes #1175 by @sierra-moxon in #1174
• add an ordered prefix list per class fixes #1173 by @sierra-moxon in #1176
• fixed inverted domain/range for predicates by @vincentvialard in #1178
• fixed typo in alias of 'in taxon' by @vincentvialard in #1177
• Add original subject, original predicate and original object to Association by @kevinschaper in #1182
• fixes #1170, fixes #1167, fixes #1168, fixes #1180, fixes #1166 by @sierra-moxon in #1183
• Fix some opposite predicates should be inverses by @vincentvialard in #1179
• removing inverse and opposite from subclass, superclass predicates by @sierra-moxon in #1184
• fixing errors in id prefixes generator, removing csv generator, fixin… by @sierra-moxon in #1185

New Contributors

• @vincentvialard made their first contribution in #1178

Full Changelog: v3.1.0...v3.1.1

v3.1.0

What's Changed

• Some (new?) inverse predicates are missing their is_a property connection to the predicate hierarchy by @RichardBruskiewich in #1095
• Updating biolink-model.yaml to include new classes for epigenomic ent… by @beasleyjonm in #1102
• fixes #1111 - exposure_event is_a: ontology_class by @sierra-moxon in #1113
• fixes #1101, fixes #1100, fixes #1098 add subject of investigation mixin to many different organism level c… by @sierra-moxon in #1115
• Association and Predicates for Gene to Gene Family relationships by @RichardBruskiewich in #945
• Supporting publications fixes #1107 by @sierra-moxon in #1114
• remove obsolete GAMMA predicates by @EvanDietzMorris in #1117
• Move deprecated mappings to examples/biolink3_migration/predicate_mappings.yaml by @sierra-moxon in #1116
• fixes #1088 - make macromolecular complex a class, add mappings by @sierra-moxon in #1125
• fixes #1096 - add Study, Variable, CommonDataElement by @sierra-moxon in #1126
• fixes #1124 adding canonical tags to response predicates, deprecating increase/de… by @sierra-moxon in #1127
• updating orphanet prefix, fixes #1122 by @sierra-moxon in #1128
• fixes #1119 by @sierra-moxon in #1129
• remove mixin tag from regulates, fixes #1094 by @sierra-moxon in #1130
• adding documentation and examples on qualifiers partially fixes #1133 by @sierra-moxon in #1134
• fixing unknown prefix artifact regeneration error by @sierra-moxon in #1135
• update doc gen to not include yamlfile by @sierra-moxon in #1136
• replace spaces with underscores in enumerations by @sierra-moxon in #1137
• add infores catalog as a nodes tsv file by @sierra-moxon in #1139
• fixes #1132 : include mappings and id prefixes for "chemical role" by @sierra-moxon in #1142
• refactor Sequence Variant to make it more clear that CNVs are a sublc… by @sierra-moxon in #1141
• refactor helpdesk template to include contact information, fixes #1138 by @sierra-moxon in #1146

New Contributors

• @beasleyjonm made their first contribution in #1102
• @EvanDietzMorris made their first contribution in #1117

Full Changelog: v3.0.3...v3.1.0

v3.0.3

What's Changed

• add UMLS as a prefix for organism fixes #1084 by @sierra-moxon in #1086
• Mappings for KGX category assignment fixes #1082 by @sierra-moxon in #1087
• Migrate mappings qualifiers by @sierra-moxon in #1089
• add missing inverses or missing symmetric tag by @sierra-moxon in #1090

Full Changelog: v3.0.2...v3.0.3

v3.0.2

What's Changed

• add side-effect, deprecate causes adverse event fixes #1051 by @sierra-moxon in #1057
• deprecate original knowledge source? by @sierra-moxon in #1079
• Activity or abundance by @sierra-moxon in #1083

Full Changelog: v3.0.1...v3.0.2

v3.0.1

What's Changed

• Trapi examples by @sierra-moxon in #1067
• S-P-O annotation of annotation of diseases or phenotypic features with mode of inheritance. by @RichardBruskiewich in #1068
• fixes #1075, add mappings to organism, virus, and cellular organism by @sierra-moxon in #1076
• add exact, narrow, broad, related synonym slots to the model fixes #1073 by @sierra-moxon in #1077
• adding supporting data properties, fixes #1074 by @sierra-moxon in #1078
• fix typos in enumerated gene->chemical terms by @sierra-moxon in #1080

Full Changelog: v3.0.0...v3.0.1

rc-deprecated-predicates

Full Changelog: v3.0.1...deprecated-predicates

v2.4.8

special August QotM release for Translator

v3.0.0

What's Changed

• fix treated_by inverse predicate hiearchy fixes #1048 by @sierra-moxon in #1056
• add SPDI fixes #1042 by @sierra-moxon in #1058
• biolink-3.0 fixes #991 fixes #1049 by @sierra-moxon in #1028
• Supporting study fixes #1050 by @sierra-moxon in #1059
• refactoring w/re to interaction conversation, add examples for 3.0 qualifiers by @sierra-moxon in #1060
• remove older deprecations by @sierra-moxon in #1061
• Minor fixes/changes to new content in biolink-model.yaml by @mbrush in #1062
• bug fix likelihood hierarchy by @sierra-moxon in #1063

Full Changelog: v2.4.7...v3.0.0