From fd7434ddd1f27993601a2e8bcfb581d37bdc990f Mon Sep 17 00:00:00 2001
From: Daniella Vo <35377884+daniellavo@users.noreply.github.com>
Date: Fri, 19 Jan 2024 12:55:33 -0800
Subject: [PATCH 1/2] add missing dependencies

---
 rna-seq.yml | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/rna-seq.yml b/rna-seq.yml
index 89946c5..cebf196 100644
--- a/rna-seq.yml
+++ b/rna-seq.yml
@@ -4,6 +4,12 @@ channels:
 - bioconda
 - nodefaults
 dependencies:
+- bioconda::fastqc==0.11.9
+- bioconda::star==2.7.10b
+- bioconda::samtools==1.16.1
+- bioconda::subread==2.0.3
+- bioconda::multiqc==1.14
+- conda-forge::ipykernel==6.22.0
 - conda-forge::r-irkernel==1.3.1
 - conda-forge::r-ggplot2==3.4.0
 - conda-forge::r-gplots==3.1.3

From 3d56bcffe1ff8ed3aa8400f0e2350bf029894499 Mon Sep 17 00:00:00 2001
From: Daniella Vo <35377884+daniellavo@users.noreply.github.com>
Date: Fri, 19 Jan 2024 14:28:24 -0800
Subject: [PATCH 2/2] fix multiqc version

---
 rna-seq.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/rna-seq.yml b/rna-seq.yml
index cebf196..cd4988a 100644
--- a/rna-seq.yml
+++ b/rna-seq.yml
@@ -8,7 +8,7 @@ dependencies:
 - bioconda::star==2.7.10b
 - bioconda::samtools==1.16.1
 - bioconda::subread==2.0.3
-- bioconda::multiqc==1.14
+- bioconda::multiqc==1.17
 - conda-forge::ipykernel==6.22.0
 - conda-forge::r-irkernel==1.3.1
 - conda-forge::r-ggplot2==3.4.0