The Thousand Variant Callers Project is a comprehensive survey of software available (~250 packages) for identification of mutations in human DNA. Included are links to published studies and software repositories, as well as extensive details for each on benchmarking, algorithmic details, application notes, and so on.
See the wiki page or browse the markdown files for the surveys.
This is a free, community-driven resource so if you see something incorrect or incomplete, or you have some unique insight, please lend a hand! To add content please clone the repo, edit the wiki markdown files, and make a pull request. Thanks!