.gitignore

# Old and unfinished analyses
wip/*

# Sensitive environment variables
environment*

# other sensitive data
sars2/results/
sars2/results/*
sars2_21L/results/
sars2_21L/results/*
seasonal-flu/results/
seasonal-flu/results/*
seasonal-flu/new_builds/vic_60y/
seasonal-flu/new_builds/vic_60y/*
seasonal-flu-new/builds/
seasonal-flu-new/builds/*
adaptive-evolution-analysis/adaptation_results/intermediates/input_data_h3n2*
adaptive-evolution-analysis/adaptation_results/intermediates/input_data_h1n1pdm*
adaptive-evolution-analysis/adaptation_results/intermediates/input_data_vic*
adaptive-evolution-analysis/adaptation_results/intermediates/input_data_yam*

# files that are too big
adaptive-evolution-analysis/review_analyses/pairwise_distances_Fst/
adaptive-evolution-analysis/review_analyses/pairwise_distances_Fst/*

# Snakemake state dir
.snakemake
snakemake_log


# For Python #
##############
*.pyc
.tox/
.cache/
.ipynb_checkpoints
*/.ipynb_checkpoints/*
__pycache__/*


# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
Icon?
ehthumbs.db
Thumbs.db
*~

# git files #
######################
.gitattributes