diff --git a/README.md b/README.md index 459da6d..b4c766d 100644 --- a/README.md +++ b/README.md @@ -73,21 +73,21 @@ $ ./miniconda3.sh $ conda update conda ``` -3. Create a new virtual environment, which will be installed in the ~/miniconda3/envs directory. Here the virtual environment is named `hom` but another name will work. +3. Clone the `hominid` repository. ``` -$ conda create -n hom python=3.6 --file conda-requirements.txt +$ git clone https://github.com/blekhmanlab/hominid.git +$ cd hominid ``` -4. Install `HOMINID` in the virtual environment with the following commands: +4. Create a new virtual environment and install the `HOMINID` software. Here the virtual environment is named `hom` but another name will work. ``` -$ git clone https://github.com/blekhmanlab/hominid.git -$ cd hominid +$ conda create -n hom python=3.6 --file conda-requirements.txt $ source activate hom (hom) $ pip install -r requirements.txt (hom) $ conda install rpy2 r-essentials ``` The `pip install` command installs the `HOMINID` package itself and a package that is not available to `conda`. The final `conda install` command -installs the required packages for the optional plotting script. +installs packages for the optional plotting script. Once `HOMINID` has been installed with `pip` the scripts can be executed from any directory by name as follows: