From 4d88b69e2ac3295240884d49c132f7c12de5bec6 Mon Sep 17 00:00:00 2001 From: Martin Petr Date: Tue, 15 Oct 2024 12:40:43 +0000 Subject: [PATCH] Update diagnostics vignette --- vignettes/vignette-06-diagnostics.Rmd | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/vignettes/vignette-06-diagnostics.Rmd b/vignettes/vignette-06-diagnostics.Rmd index d08f363..24c0684 100644 --- a/vignettes/vignette-06-diagnostics.Rmd +++ b/vignettes/vignette-06-diagnostics.Rmd @@ -20,6 +20,7 @@ knitr::opts_chunk$set( eval = slendr_present ) +devtools::install(upgrade = FALSE) devtools::load_all() dataX_path <- here::here("inst/examples/downstream_dataX.rds") @@ -250,17 +251,17 @@ tstart <- Sys.time() ```{r, eval=!data_exists} dataX <- simulate_abc(modelX, priors, functions, observed, iterations = 10000, - sequence_length = 50e6, recombination_rate = 1e-8, mutation_rate = 1e-8) + sequence_length = 10e6, recombination_rate = 1e-8, mutation_rate = 1e-8) ``` ```{r, eval=!data_exists} dataY <- simulate_abc(modelY, priors, functions, observed, iterations = 10000, - sequence_length = 50e6, recombination_rate = 1e-8, mutation_rate = 1e-8) + sequence_length = 10e6, recombination_rate = 1e-8, mutation_rate = 1e-8) ``` ```{r, eval=!data_exists} dataZ <- simulate_abc(modelZ, priors, functions, observed, iterations = 10000, - sequence_length = 50e6, recombination_rate = 1e-8, mutation_rate = 1e-8) + sequence_length = 10e6, recombination_rate = 1e-8, mutation_rate = 1e-8) ``` ```{r, eval=!data_exists, echo=FALSE}