Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Scrape INSDC accession numbers found in reference list/DAS #12

Open
lina-kim opened this issue Aug 1, 2024 · 0 comments
Open

Scrape INSDC accession numbers found in reference list/DAS #12

lina-kim opened this issue Aug 1, 2024 · 0 comments

Comments

@lina-kim
Copy link
Collaborator

lina-kim commented Aug 1, 2024 •
edited
Loading

Our current workflow only evaluates accession numbers found in the main body of the text. Some articles (e.g. PMC9117330) include accession numbers in the references section, and these should also be considered.

Other articles have a separate Data Availability Statement section (e.g. PMC8601557), which should also be scraped for accession numbers.
@lina-kim lina-kim changed the title Scrape INSDC accession numbers found in reference list Scrape INSDC accession numbers found in reference list/DAS Aug 20, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@lina-kim