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Allow split FASTQs starting with special characters (#) to be imported by IMPORT_FASTQ #28

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lina-kim opened this issue Jun 24, 2022 · 0 comments
Open

Allow split FASTQs starting with special characters (#) to be imported by IMPORT_FASTQ #28

lina-kim opened this issue Jun 24, 2022 · 0 comments
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@lina-kim
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Currently exists a band-aid fix in errorStrategy 'ignore'.

On LM, in directory /cluster/work/saga/alloHCT/pipeline/test_slurm/split see work hashes:

  • 67/7c5bb7
  • 12/de4ea7
  • af/238b26
  • 12/4b1506
  • 09/1a4c83
  • 77/8f151e

Also: should check whether previous runs actually imported these FASTQs or ignored them when part of a larger manifest.
@lina-kim lina-kim self-assigned this Jun 24, 2022
@lina-kim lina-kim mentioned this issue Jul 15, 2022
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@lina-kim lina-kim added the bug Something isn't working label Jan 30, 2023
@lina-kim lina-kim removed their assignment Jan 30, 2023
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