_quarto.yml

project:
  type: book
  output-dir: _book

# Book formatting types and options
format:
  html:
    theme: 
      - cosmo
      - test_quarto_book_styles.scss
    # mainfont: Roboto # For testing (https://ucsb-meds.github.io/customizing-quarto-websites/#/select-fonts)
  pdf:
    documentclass: scrreprt
    
# Add this in order to use webR
filters:
  - webr

# Bibliography and citation options
bibliography: references.bib
csl: ama.csl

# Set editor to default to source view instead of visual view
editor: source

# To make sure that R, Python, and Julia code is only executed locally, 
# configure your project to use Quarto’s freeze feature by adding this to your 
# _quarto.yml. (https://quarto.org/docs/publishing/netlify.html)
execute:
  freeze: auto

# Book structure and options
book:
  # Basic metadata
  title: "Test Quarto Book"
  author: "Brad Cannell"
  date: today # Figure out how to automatically update the date on render.
  favicon: r4epi_favicon.png
  repo-url: https://github.com/brad-cannell/test_quarto_book
  repo-actions: [edit]
  page-footer: 
    left: |
      R for Epidemiology
    right: |
      This book was built with <a href="https://quarto.org/">Quarto</a>.
  
  # Book options
  search: true
  downloads: [pdf, docx] # https://quarto.org/docs/books/book-output.html#sidebar-tools
  sharing: [twitter, facebook]
  page-navigation: true # Haven't played with this much yet. https://quarto.org/docs/books/book-structure.html#page-navigation

  # Chapter sturcture
  # https://quarto.org/docs/books/book-structure.html
  chapters:
    # Index is the landing page for the HTML version of the book.
    - index.qmd
    
    # My chapters
    # Parts can be qmd files (if you want explanitory text) or characater strings
    # If you only want a part title.
    # This method does not look good in pdf format.
    - part: "chapters/part_book_options.qmd"
      # Make sure to type "chapters" again under each part.
      chapters: 
      - chapters/book_options.qmd
      - chapters/other.qmd
      
    - part: "Authoring"
      chapters: 
        - chapters/call_out_boxes.qmd
        - chapters/cross_references/cross_references.qmd
        - chapters/custom_styling.qmd
        - chapters/gifs/gifs.qmd
        - chapters/google_sheets.qmd
        - chapters/images/images.qmd
        - chapters/rmd_documents.rmd
        - chapters/tables.qmd
        - chapters/word_documents.qmd
        
    - part: "Working with Code"
      chapters: 
        - chapters/code_chunks.qmd
        - chapters/parameterizing.qmd
        - chapters/source_qmd_files.qmd
        - chapters/webr/webr.qmd
        
    - part: "Publishing"
      chapters: 
        - chapters/pdf.qmd
        - chapters/slide_presentations.qmd
        - chapters/publishing.qmd
    
    # Built-in chapters
    - part: "Built-in Chapters"
      chapters:
        - chapters/references.qmd
  
  # We can also add appendices and track them separately from other book parts.  
  appendices: 
    - chapters/appendices/appendix_example.qmd
    - chapters/appendices/glossary.qmd