_quarto.yml

project:
  type: book
  output-dir: _book

# Book formatting types and options
format:
  html:
    theme: 
      - cosmo
      - r4epi_styles.scss
  pdf:
    documentclass: scrreprt
    
# Bibliography and citation options
bibliography: references.bib
csl: ama.csl

# Set editor to default to source view instead of visual view
editor: source

# Book structure and options
book:
  # Basic metadata
  title: "Brad Cannell Wiki"
  date: today
  favicon: r4epi_favicon.png
  site-url: https://brad-cannell.github.io/wiki_brad_cannell/
  repo-url: https://github.com/brad-cannell/wiki_brad_cannell
  repo-actions: [edit, issue]
  page-footer: 
    left: |
      Brad Cannell Wiki
    right: |
      This book was built with <a href="https://quarto.org/">Quarto</a>.
  
  # Book options
  search: true
  downloads: [pdf] # https://quarto.org/docs/books/book-output.html#sidebar-tools
  page-navigation: true # Haven't played with this much yet. https://quarto.org/docs/books/book-structure.html#page-navigation

  # Chapter sturcture
  # https://quarto.org/docs/books/book-structure.html
  chapters:
    # Index is the landing page for the HTML version of the book.
    - index.qmd
    - sops/writing_sops/writing_sops.qmd
    
    # Parts can be qmd files (if you want explanitory text) or characater strings
    # if you only want a part title. The separate qmd document method does not 
    # look good in pdf format.
    - part: "Software"
      chapters: 
        - sops/task_management/task_management.qmd
      
    - part: "Writing"
      chapters:
        - sops/authoring_manuscripts/authoring_manuscripts.qmd
  
  # We can also add appendices and track them separately from other book parts.  
  # appendices:
  #   - chapters/appendices/glossary.qmd