test_other_formats.yaml

name: test generating other formats

on:
  push:
    branches:
      - main
  pull_request:

permissions:
  contents: write

jobs:
  test:
    runs-on: ubuntu-latest

    steps:
      - name: Checkout this repository
        uses: actions/checkout@v3

      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.9

      - name: Install the required python packages
        run: python -m pip install .[test]

      - name: Other installations
        run: |
          sudo apt-get update
          sudo apt-get install -y build-essential git wget curl colordiff

      - name: Generate other model representations
        run: |
          cd linkml-schema
          mkdir tests_artifacts
          mkdir tests_artifacts/json-schema-autogen
          mkdir tests_artifacts/jsonld-context-autogen
          mkdir tests_artifacts/models_py-autogen
          mkdir tests_artifacts/erdiagram-autogen
          for file in *.yaml; do
            if [[ "$file" != *bican* && "$file" != *core* ]]; then
              name=`basename ${file} .yaml`;
              echo "Processing $name file..";
              gen-json-schema  ${file} > tests_artifacts/json-schema-autogen/${name}.json;
              echo "Diff in json schema for $name file (comparing to the current version)"
              colordiff ../json-schema-autogen/${name}.json tests_artifacts/json-schema-autogen/${name}.json || true
              # generating jsonld context and removing generation_date field to avoid constant updates
              gen-jsonld-context ${file} > tests_artifacts/jsonld-context-autogen/${name}.context.jsonld;
              sed -i "/generation_date/d" tests_artifacts/jsonld-context-autogen/${name}.context.jsonld;
              echo "Diff in jsonld context for $name file (comparing to the current version)"
              colordiff ../jsonld-context-autogen/${name}.context.jsonld tests_artifacts/jsonld-context-autogen/${name}.context.jsonld || true
              gen-pydantic ${file} > tests_artifacts/models_py-autogen/${name}.py;
              echo "Diff in pydantic model for $name file (comparing to the current version)"
              colordiff ../models_py-autogen/${name}.py tests_artifacts/models_py-autogen/${name}.py || true
              if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ]; then
                echo "Creating and Fixing diagrams for $name";
                python ../utils/fix_and_create_erdiagram.py
              else
                gen-erdiagram ${file} > tests_artifacts/erdiagram-autogen/${name}.md;
              fi
            fi
          done
          ls -l tests_artifacts/json-schema-autogen

      - name: Upload artifact
        uses: actions/upload-artifact@v4
        with:
          name: artifacts
          path: linkml-schema/tests_artifacts/*