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Tedana: TE-dependent analysis #31

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2 tasks done
eurunuela opened this issue Oct 20, 2023 · 3 comments
Open
2 tasks done

Tedana: TE-dependent analysis #31

eurunuela opened this issue Oct 20, 2023 · 3 comments
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git_skills:0_none hub:donostia_esp modality:fMRI modality:MRI programming:documentation programming:html_css programming:Python project_development_status:2_releases_existing project_type:documentation project_type:method_development project status:web_ready topic:ICA topic:PCA

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@eurunuela
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eurunuela commented Oct 20, 2023 •
edited by Remi-Gau
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Title

Tedana: TE-dependent analysis

Leaders

Eneko Uruñuela (@eurunuela)

Collaborators

No response

Brainhack Global 2023 Event

Brainhack Donostia

Project Description

  • What are you doing, for whom, and why?
  • What makes your project special and exciting?
  • How to get started?
  • Where to find key resources?

Link to project repository/sources

https://github.com/ME-ICA/tedana

Goals for Brainhack Global

They are listed in the following GitHub discussion: ME-ICA/tedana#987

Good first issues

  1. issue one: Fix reference rendering in HTML report

  2. issue two: Documentation to highlight situations or studies where multi-echo or tedana are specifically useful

Communication channels

https://mattermost.brainhack.org/brainhack/channels/tedana

Skills

  • Python: beginner/medium
  • Documentation: beginner

Onboarding documentation

https://github.com/ME-ICA/tedana/blob/main/CONTRIBUTING.md

What will participants learn?

  • How small scientific open-source software development happens
  • How to contribute to such projects
  • How tedana works for multi-echo fMRI denoising
  • How to use GitHub

Data to use

Multi-echo data we use to test tedana is available in OSF: https://osf.io/bpe8h/

Number of collaborators

2

Credit to collaborators

Project contributors are listed on the project README using the all contributors bot:

https://github.com/ME-ICA/tedana

Image

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Type

documentation, method_development, visualization

Development status

2_releases_existing

Topic

ICA, PCA

Tools

other

Programming language

documentation, Python, html_css

Modalities

fMRI

Git skills

0_no_git_skills

Anything else?

No response

Things to do after the project is submitted and ready to review.

  • Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
  • Twitter-sized summary of your project pitch.
@Remi-Gau
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good to go

@eurunuela
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Author

Do you need me to do anything @Remi-Gau ?

@Remi-Gau
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nope: CI did it for us

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git_skills:0_none hub:donostia_esp modality:fMRI modality:MRI programming:documentation programming:html_css programming:Python project_development_status:2_releases_existing project_type:documentation project_type:method_development project status:web_ready topic:ICA topic:PCA
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@crnolan @Remi-Gau @eurunuela