Physiological derivatives BIDS proposal

[me-pic]

Title

Physiological derivatives BIDS proposal

Leaders

Marie-Eve Picard
email: [email protected]
Github Username: me-pic,
Discord Username: me_pic (Marie-Eve Picard (she/her)),

Collaborators

Mary Miedema, Github Username: m-miedema

Brainhack Global 2023 Event

BrainHack Vanderbilt

Project Description

Physiopy is a community dedicated to developing solutions for handling physiological data acquired in neuroimaging setups. Currently, physiopy supports and maintains phys2bids, a library that standardizes raw physiological data in accordance with the Brain Imaging Data Structure (BIDS). The community is also developing and managing other libraries like peakdet (processing and analysing), Phys2Denoise (producing physiological regressors for neuroimaging denoising), and PhysioQC (quality control). All those libraries produce a bunch of different derivatives. However, the derivatives structure and requirements for physiological data (i.e. cardiac, respiratory, blood pressure, etc.) are not yet covered by the BIDS specification. With this project, we are hoping to start a discussion around an eventual BIDS proposal on physiological derivatives.

This project does not require coding skills to join. If you are enthusiastic about physiological data, BIDS, both, or just a curious person, we’re happy to have you on board!

Link to project repository/sources

https://github.com/orgs/physiopy

Goals for Brainhack Global

Open discussion on how to BIDSify physiological data derivatives (i.e. preprocessed data, peaks, troughs, rvt, hrv, etc.)

Good first issues

Come and join the discussion!
https://github.com/orgs/physiopy/projects/3/

Communication channels

#bids_derivatives channel on https://discord.gg/GyeeVbYC

Skills

• Physiological data: cardiac, respiratory, skin conductance etc. [all levels]
• BIDS standards: intermediate/advanced
• Data management: all levels
• github: all levels
• python: intermediate/advanced

Onboarding documentation

No response

What will participants learn?

Participants will learn about BIDS standards, and derivatives management.

Data to use

No response

Number of collaborators

1

Credit to collaborators

Contributors are welcome to participate in drafting the physiological derivatives BIDS Extension Proposal (BEP), and be listed among the authors.

Image

Type

data_management

Development status

0_concept_no_content

Topic

physiology

Tools

BIDS

Programming language

not_applicable

Modalities

other

Git skills

0_no_git_skills

Anything else?

No response

Things to do after the project is submitted and ready to review.

• Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
• Twitter-sized summary of your project pitch.

[Remi-Gau]

@me-pic
your project is displayed on the website

[Remi-Gau]

http://brainhack.org/global2023/projects/