diff --git a/paper/Criticality.jl/Manifest.toml b/paper/Criticality.jl/Manifest.toml index 2c60c6d..ab9253a 100644 --- a/paper/Criticality.jl/Manifest.toml +++ b/paper/Criticality.jl/Manifest.toml @@ -1,8 +1,8 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.0" +julia_version = "1.10.2" manifest_format = "2.0" -project_hash = "fb8ce6b0361937abab3200dc0f1922f729bd937b" +project_hash = "84d93d9dc4b3f1177d7b2c95ee30423c9229049e" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -11,9 +11,9 @@ uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" weakdeps = ["ChainRulesCore", "Test"] -[deps.AbstractFFTs.extensions] -AbstractFFTsChainRulesCoreExt = "ChainRulesCore" -AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.AbstractLattices]] git-tree-sha1 = "222ee9e50b98f51b5d78feb93dd928880df35f06" @@ -26,31 +26,23 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[deps.Accessors]] -deps = [ - "CompositionsBase", - "ConstructionBase", - "Dates", - "InverseFunctions", - "LinearAlgebra", - "MacroTools", - "Test", -] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" version = "0.1.35" -[deps.Accessors.extensions] -AccessorsAxisKeysExt = "AxisKeys" -AccessorsIntervalSetsExt = "IntervalSets" -AccessorsStaticArraysExt = "StaticArrays" -AccessorsStructArraysExt = "StructArrays" + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" -[deps.Accessors.weakdeps] -AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" -IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" -Requires = "ae029012-a4dd-5104-9daa-d747884805df" -StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" -StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] @@ -59,41 +51,18 @@ uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "4.0.1" weakdeps = ["StaticArrays"] -[deps.Adapt.extensions] -AdaptStaticArraysExt = "StaticArrays" + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.AllenNeuropixelsBase]] -deps = [ - "AllenSDK", - "CSV", - "Colors", - "CondaPkg", - "DataFrames", - "Dierckx", - "DimensionalData", - "Downloads", - "FileIO", - "GeometryBasics", - "HDF5", - "IntervalSets", - "JSON", - "NRRD", - "NWBStream", - "Preferences", - "ProgressLogging", - "PythonCall", - "Random", - "SparseArrays", - "Statistics", - "TimeseriesTools", -] -path = "/headnode2/bhar9988/code/DDC/AllenNeuropixelsBase.jl/" +deps = ["AllenSDK", "CSV", "Colors", "CondaPkg", "DataFrames", "Dierckx", "DimensionalData", "Downloads", "FileIO", "GeometryBasics", "HDF5", "IntervalSets", "JSON", "NRRD", "NWBStream", "Preferences", "ProgressLogging", "PythonCall", "Random", "SparseArrays", "Statistics", "TimeseriesTools"] +git-tree-sha1 = "aa91ab98246deaeeec58a4c12cc364f02e673ad2" uuid = "0b0e28cf-a3af-44db-8bea-1c4507018d35" version = "0.1.0" [[deps.AllenSDK]] deps = ["PythonCall"] -path = "../../../DDC/AllenSDK.jl" +git-tree-sha1 = "63895d8bda6291bbbbc4dbc34ceddf223bce7981" uuid = "9d22b198-c11d-497b-9ac7-6add78eade21" version = "0.1.0" @@ -104,31 +73,13 @@ uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340" version = "0.4.1" [[deps.AnovaBase]] -deps = [ - "Distributions", - "Printf", - "Reexport", - "Statistics", - "StatsBase", - "StatsModels", -] +deps = ["Distributions", "Printf", "Reexport", "Statistics", "StatsBase", "StatsModels"] git-tree-sha1 = "153f4ca66496d925ccde1ded1a9364e946e0710d" uuid = "946dddda-6a23-4b48-8e70-8e60d9b8d680" version = "0.8.0" [[deps.AnovaMixedModels]] -deps = [ - "AnovaBase", - "Distributions", - "GLM", - "LinearAlgebra", - "MixedModels", - "Printf", - "Reexport", - "Statistics", - "StatsBase", - "StatsModels", -] +deps = ["AnovaBase", "Distributions", "GLM", "LinearAlgebra", "MixedModels", "Printf", "Reexport", "Statistics", "StatsBase", "StatsModels"] git-tree-sha1 = "bb1031e536952ada4822538a770430b185864b17" uuid = "6832ca0c-c2dd-4d0c-851a-521ca5db42f5" version = "0.2.4" @@ -149,21 +100,21 @@ git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.7.1" -[deps.ArrayInterface.extensions] -ArrayInterfaceBandedMatricesExt = "BandedMatrices" -ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" -ArrayInterfaceCUDAExt = "CUDA" -ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" -ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" -ArrayInterfaceTrackerExt = "Tracker" - -[deps.ArrayInterface.weakdeps] -BandedMatrices = "aae01518-5342-5314-be14-df237901396f" -BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" -CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" -GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" -StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] @@ -172,28 +123,11 @@ uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" version = "1.7.0" weakdeps = ["SparseArrays"] -[deps.ArrayLayouts.extensions] -ArrayLayoutsSparseArraysExt = "SparseArrays" + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" [[deps.Arrow]] -deps = [ - "ArrowTypes", - "BitIntegers", - "CodecLz4", - "CodecZstd", - "ConcurrentUtilities", - "DataAPI", - "Dates", - "EnumX", - "LoggingExtras", - "Mmap", - "PooledArrays", - "SentinelArrays", - "Tables", - "TimeZones", - "TranscodingStreams", - "UUIDs", -] +deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "LoggingExtras", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"] git-tree-sha1 = "29faa9835f77dee04b2833b2c9ee415223b3ebbd" uuid = "69666777-d1a9-59fb-9406-91d4454c9d45" version = "2.7.1" @@ -226,19 +160,7 @@ uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" [[deps.BSplineKit]] -deps = [ - "ArrayLayouts", - "BandedMatrices", - "FastGaussQuadrature", - "LinearAlgebra", - "PrecompileTools", - "Random", - "Reexport", - "SparseArrays", - "Static", - "StaticArrays", - "StaticArraysCore", -] +deps = ["ArrayLayouts", "BandedMatrices", "FastGaussQuadrature", "LinearAlgebra", "PrecompileTools", "Random", "Reexport", "SparseArrays", "Static", "StaticArrays", "StaticArraysCore"] git-tree-sha1 = "40946927f4799ea625086a14796087959d3c4fcc" uuid = "093aae92-e908-43d7-9660-e50ee39d5a0a" version = "0.17.1" @@ -250,8 +172,8 @@ uuid = "aae01518-5342-5314-be14-df237901396f" version = "1.6.1" weakdeps = ["SparseArrays"] -[deps.BandedMatrices.extensions] -BandedMatricesSparseArraysExt = "SparseArrays" + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -295,21 +217,7 @@ uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0" version = "1.0.1+0" [[deps.CSV]] -deps = [ - "CodecZlib", - "Dates", - "FilePathsBase", - "InlineStrings", - "Mmap", - "Parsers", - "PooledArrays", - "PrecompileTools", - "SentinelArrays", - "Tables", - "Unicode", - "WeakRefStrings", - "WorkerUtilities", -] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" version = "0.10.12" @@ -321,40 +229,13 @@ uuid = "159f3aea-2a34-519c-b102-8c37f9878175" version = "1.0.5" [[deps.CairoMakie]] -deps = [ - "CRC32c", - "Cairo", - "Colors", - "FFTW", - "FileIO", - "FreeType", - "GeometryBasics", - "LinearAlgebra", - "Makie", - "PrecompileTools", -] +deps = ["CRC32c", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] git-tree-sha1 = "a80d49ed3333f5f78df8ffe76d07e88cc35e9172" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" version = "0.11.8" [[deps.Cairo_jll]] -deps = [ - "Artifacts", - "Bzip2_jll", - "CompilerSupportLibraries_jll", - "Fontconfig_jll", - "FreeType2_jll", - "Glib_jll", - "JLLWrappers", - "LZO_jll", - "Libdl", - "Pixman_jll", - "Pkg", - "Xorg_libXext_jll", - "Xorg_libXrender_jll", - "Zlib_jll", - "libpng_jll", -] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.16.1+1" @@ -366,19 +247,7 @@ uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" [[deps.Catch22]] -deps = [ - "DelimitedFiles", - "DimensionalData", - "Libdl", - "LinearAlgebra", - "Pkg", - "ProgressLogging", - "Reexport", - "Requires", - "Statistics", - "TimeseriesFeatures", - "catch22_jll", -] +deps = ["DelimitedFiles", "DimensionalData", "Libdl", "LinearAlgebra", "Pkg", "ProgressLogging", "Reexport", "Requires", "Statistics", "TimeseriesFeatures", "catch22_jll"] git-tree-sha1 = "e62cc37eb8afccc1112d71608ca0746e5e7ada4a" uuid = "acdeb78f-3d39-4310-8fdf-6d75c17c6d5a" version = "0.5.0" @@ -390,8 +259,8 @@ uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.21.1" weakdeps = ["SparseArrays"] -[deps.ChainRulesCore.extensions] -ChainRulesCoreSparseArraysExt = "SparseArrays" + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] @@ -424,14 +293,7 @@ uuid = "a2cac450-b92f-5266-8821-25eda20663c8" version = "0.4.0" [[deps.ColorSchemes]] -deps = [ - "ColorTypes", - "ColorVectorSpace", - "Colors", - "FixedPointNumbers", - "PrecompileTools", - "Random", -] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" version = "3.24.0" @@ -443,21 +305,14 @@ uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.11.4" [[deps.ColorVectorSpace]] -deps = [ - "ColorTypes", - "FixedPointNumbers", - "LinearAlgebra", - "Requires", - "Statistics", - "TensorCore", -] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.10.0" weakdeps = ["SpecialFunctions"] -[deps.ColorVectorSpace.extensions] -SpecialFunctionsExt = "SpecialFunctions" + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] @@ -488,13 +343,13 @@ uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.12.0" weakdeps = ["Dates", "LinearAlgebra"] -[deps.Compat.extensions] -CompatLinearAlgebraExt = "LinearAlgebra" + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+1" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -502,8 +357,8 @@ uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" version = "0.1.2" weakdeps = ["InverseFunctions"] -[deps.CompositionsBase.extensions] -CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] @@ -512,15 +367,7 @@ uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" version = "2.4.1" [[deps.CondaPkg]] -deps = [ - "JSON3", - "Markdown", - "MicroMamba", - "Pidfile", - "Pkg", - "Preferences", - "TOML", -] +deps = ["JSON3", "Markdown", "MicroMamba", "Pidfile", "Pkg", "Preferences", "TOML"] git-tree-sha1 = "e81c4263c7ef4eca4d645ef612814d72e9255b41" uuid = "992eb4ea-22a4-4c89-a5bb-47a3300528ab" version = "0.2.22" @@ -532,9 +379,9 @@ uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.5.4" weakdeps = ["IntervalSets", "StaticArrays"] -[deps.ConstructionBase.extensions] -ConstructionBaseIntervalSetsExt = "IntervalSets" -ConstructionBaseStaticArraysExt = "StaticArrays" + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -547,17 +394,7 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DSP]] -deps = [ - "Compat", - "FFTW", - "IterTools", - "LinearAlgebra", - "Polynomials", - "Random", - "Reexport", - "SpecialFunctions", - "Statistics", -] +deps = ["Compat", "FFTW", "IterTools", "LinearAlgebra", "Polynomials", "Random", "Reexport", "SpecialFunctions", "Statistics"] git-tree-sha1 = "f7f4319567fe769debfcf7f8c03d8da1dd4e2fb0" uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2" version = "0.7.9" @@ -568,31 +405,7 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataFrames]] -deps = [ - "Compat", - "DataAPI", - "DataStructures", - "Future", - "InlineStrings", - "InvertedIndices", - "IteratorInterfaceExtensions", - "LinearAlgebra", - "Markdown", - "Missings", - "PooledArrays", - "PrecompileTools", - "PrettyTables", - "Printf", - "REPL", - "Random", - "Reexport", - "SentinelArrays", - "SortingAlgorithms", - "Statistics", - "TableTraits", - "Tables", - "Unicode", -] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "1.6.1" @@ -637,13 +450,7 @@ uuid = "39dd38d3-220a-591b-8e3c-4c3a8c710a94" version = "0.5.3" [[deps.Dierckx_jll]] -deps = [ - "Artifacts", - "CompilerSupportLibraries_jll", - "JLLWrappers", - "Libdl", - "Pkg", -] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "6596b96fe1caff3db36415eeb6e9d3b50bfe40ee" uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b" version = "0.1.0+0" @@ -655,75 +462,40 @@ uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" version = "1.1.0" [[deps.DiffRules]] -deps = [ - "IrrationalConstants", - "LogExpFunctions", - "NaNMath", - "Random", - "SpecialFunctions", -] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.DimensionalData]] -deps = [ - "Adapt", - "ArrayInterface", - "ConstructionBase", - "Dates", - "Extents", - "IntervalSets", - "InvertedIndices", - "IteratorInterfaceExtensions", - "LinearAlgebra", - "PrecompileTools", - "Random", - "RecipesBase", - "SparseArrays", - "Statistics", - "TableTraits", - "Tables", -] +deps = ["Adapt", "ArrayInterface", "ConstructionBase", "Dates", "Extents", "IntervalSets", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "PrecompileTools", "Random", "RecipesBase", "SparseArrays", "Statistics", "TableTraits", "Tables"] git-tree-sha1 = "16ebad2fa5262cb9986406f7f90a7ff5082d98f7" uuid = "0703355e-b756-11e9-17c0-8b28908087d0" version = "0.25.8" weakdeps = ["Makie"] -[deps.DimensionalData.extensions] -DimensionalDataMakie = "Makie" + [deps.DimensionalData.extensions] + DimensionalDataMakie = "Makie" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = [ - "FillArrays", - "LinearAlgebra", - "PDMats", - "Printf", - "QuadGK", - "Random", - "SpecialFunctions", - "Statistics", - "StatsAPI", - "StatsBase", - "StatsFuns", -] +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" version = "0.25.107" -[deps.Distributions.extensions] -DistributionsChainRulesCoreExt = "ChainRulesCore" -DistributionsDensityInterfaceExt = "DensityInterface" -DistributionsTestExt = "Test" + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" -[deps.Distributions.weakdeps] -ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -776,39 +548,13 @@ uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" version = "0.1.2" [[deps.FFMPEG_jll]] -deps = [ - "Artifacts", - "Bzip2_jll", - "FreeType2_jll", - "FriBidi_jll", - "JLLWrappers", - "LAME_jll", - "Libdl", - "Ogg_jll", - "OpenSSL_jll", - "Opus_jll", - "PCRE2_jll", - "Zlib_jll", - "libaom_jll", - "libass_jll", - "libfdk_aac_jll", - "libvorbis_jll", - "x264_jll", - "x265_jll", -] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] git-tree-sha1 = "ab3f7e1819dba9434a3a5126510c8fda3a4e7000" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" version = "6.1.1+0" [[deps.FFTW]] -deps = [ - "AbstractFFTs", - "FFTW_jll", - "LinearAlgebra", - "MKL_jll", - "Preferences", - "Reexport", -] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" version = "1.8.0" @@ -853,32 +599,26 @@ uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "1.9.3" weakdeps = ["PDMats", "SparseArrays", "Statistics"] -[deps.FillArrays.extensions] -FillArraysPDMatsExt = "PDMats" -FillArraysSparseArraysExt = "SparseArrays" -FillArraysStatisticsExt = "Statistics" + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] -deps = [ - "ArrayInterface", - "LinearAlgebra", - "Requires", - "Setfield", - "SparseArrays", -] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" version = "2.22.0" -[deps.FiniteDiff.extensions] -FiniteDiffBandedMatricesExt = "BandedMatrices" -FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" -FiniteDiffStaticArraysExt = "StaticArrays" + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" -[deps.FiniteDiff.weakdeps] -BandedMatrices = "aae01518-5342-5314-be14-df237901396f" -BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" -StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -887,17 +627,7 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Fontconfig_jll]] -deps = [ - "Artifacts", - "Bzip2_jll", - "Expat_jll", - "FreeType2_jll", - "JLLWrappers", - "Libdl", - "Libuuid_jll", - "Pkg", - "Zlib_jll", -] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" @@ -909,25 +639,14 @@ uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[deps.ForwardDiff]] -deps = [ - "CommonSubexpressions", - "DiffResults", - "DiffRules", - "LinearAlgebra", - "LogExpFunctions", - "NaNMath", - "Preferences", - "Printf", - "Random", - "SpecialFunctions", -] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.36" weakdeps = ["StaticArrays"] -[deps.ForwardDiff.extensions] -ForwardDiffStaticArraysExt = "StaticArrays" + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] @@ -958,19 +677,7 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLM]] -deps = [ - "Distributions", - "LinearAlgebra", - "Printf", - "Reexport", - "SparseArrays", - "SpecialFunctions", - "Statistics", - "StatsAPI", - "StatsBase", - "StatsFuns", - "StatsModels", -] +deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" version = "1.9.0" @@ -988,62 +695,25 @@ uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" version = "1.3.3" [[deps.GeometryBasics]] -deps = [ - "EarCut_jll", - "Extents", - "GeoInterface", - "IterTools", - "LinearAlgebra", - "StaticArrays", - "StructArrays", - "Tables", -] +deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] git-tree-sha1 = "5694b56ccf9d15addedc35e9a4ba9c317721b788" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" version = "0.4.10" [[deps.Gettext_jll]] -deps = [ - "Artifacts", - "CompilerSupportLibraries_jll", - "JLLWrappers", - "Libdl", - "Libiconv_jll", - "Pkg", - "XML2_jll", -] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" [[deps.Glib_jll]] -deps = [ - "Artifacts", - "Gettext_jll", - "JLLWrappers", - "Libdl", - "Libffi_jll", - "Libiconv_jll", - "Libmount_jll", - "PCRE2_jll", - "Zlib_jll", -] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" version = "2.76.5+0" [[deps.GraphMakie]] -deps = [ - "DataStructures", - "GeometryBasics", - "Graphs", - "LinearAlgebra", - "Makie", - "NetworkLayout", - "PolynomialRoots", - "SimpleTraits", - "StaticArrays", -] +deps = ["DataStructures", "GeometryBasics", "Graphs", "LinearAlgebra", "Makie", "NetworkLayout", "PolynomialRoots", "SimpleTraits", "StaticArrays"] git-tree-sha1 = "2edb7248e503c2a89230e30785cb163c3f7bedfb" uuid = "1ecd5474-83a3-4783-bb4f-06765db800d2" version = "0.5.9" @@ -1061,19 +731,7 @@ uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" [[deps.Graphs]] -deps = [ - "ArnoldiMethod", - "Compat", - "DataStructures", - "Distributed", - "Inflate", - "LinearAlgebra", - "Random", - "SharedArrays", - "SimpleTraits", - "SparseArrays", - "Statistics", -] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" version = "1.9.0" @@ -1104,18 +762,7 @@ uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" version = "1.10.5+7" [[deps.HarfBuzz_jll]] -deps = [ - "Artifacts", - "Cairo_jll", - "Fontconfig_jll", - "FreeType2_jll", - "Glib_jll", - "Graphite2_jll", - "JLLWrappers", - "Libdl", - "Libffi_jll", - "Pkg", -] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" @@ -1127,18 +774,7 @@ uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" version = "0.3.23" [[deps.HypothesisTests]] -deps = [ - "Combinatorics", - "Distributions", - "LinearAlgebra", - "Printf", - "Random", - "Rmath", - "Roots", - "Statistics", - "StatsAPI", - "StatsBase", -] +deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Printf", "Random", "Rmath", "Roots", "Statistics", "StatsAPI", "StatsBase"] git-tree-sha1 = "4b5d5ba51f5f473737ed9de6d8a7aa190ad8c72f" uuid = "09f84164-cd44-5f33-b23f-e6b0d136a0d5" version = "0.11.0" @@ -1161,35 +797,13 @@ uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.7" [[deps.ImageCore]] -deps = [ - "ColorVectorSpace", - "Colors", - "FixedPointNumbers", - "MappedArrays", - "MosaicViews", - "OffsetArrays", - "PaddedViews", - "PrecompileTools", - "Reexport", -] +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] git-tree-sha1 = "b2a7eaa169c13f5bcae8131a83bc30eff8f71be0" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" version = "0.10.2" [[deps.ImageIO]] -deps = [ - "FileIO", - "IndirectArrays", - "JpegTurbo", - "LazyModules", - "Netpbm", - "OpenEXR", - "PNGFiles", - "QOI", - "Sixel", - "TiffImages", - "UUIDs", -] +deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] git-tree-sha1 = "bca20b2f5d00c4fbc192c3212da8fa79f4688009" uuid = "82e4d734-157c-48bb-816b-45c225c6df19" version = "0.6.7" @@ -1243,27 +857,14 @@ deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] -deps = [ - "Adapt", - "AxisAlgorithms", - "ChainRulesCore", - "LinearAlgebra", - "OffsetArrays", - "Random", - "Ratios", - "Requires", - "SharedArrays", - "SparseArrays", - "StaticArrays", - "WoodburyMatrices", -] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" version = "0.15.1" weakdeps = ["Unitful"] -[deps.Interpolations.extensions] -InterpolationsUnitfulExt = "Unitful" + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] deps = ["CRlibm", "RoundingEmulator"] @@ -1272,9 +873,9 @@ uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" version = "0.22.5" weakdeps = ["DiffRules", "RecipesBase"] -[deps.IntervalArithmetic.extensions] -IntervalArithmeticDiffRulesExt = "DiffRules" -IntervalArithmeticRecipesBaseExt = "RecipesBase" + [deps.IntervalArithmetic.extensions] + IntervalArithmeticDiffRulesExt = "DiffRules" + IntervalArithmeticRecipesBaseExt = "RecipesBase" [[deps.IntervalSets]] git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" @@ -1282,10 +883,10 @@ uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.10" weakdeps = ["Random", "RecipesBase", "Statistics"] -[deps.IntervalSets.extensions] -IntervalSetsRandomExt = "Random" -IntervalSetsRecipesBaseExt = "RecipesBase" -IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] deps = ["Test"] @@ -1320,19 +921,7 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = [ - "FileIO", - "MacroTools", - "Mmap", - "OrderedCollections", - "Pkg", - "PrecompileTools", - "Printf", - "Reexport", - "Requires", - "TranscodingStreams", - "UUIDs", -] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] git-tree-sha1 = "7c0008f0b7622c6c0ee5c65cbc667b69f8a65672" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" version = "0.4.45" @@ -1356,8 +945,8 @@ uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" version = "1.14.0" weakdeps = ["ArrowTypes"] -[deps.JSON3.extensions] -JSON3ArrowExt = ["ArrowTypes"] + [deps.JSON3.extensions] + JSON3ArrowExt = ["ArrowTypes"] [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] @@ -1377,13 +966,7 @@ uuid = "5cadff95-7770-533d-a838-a1bf817ee6e0" version = "0.4.0" [[deps.KernelDensity]] -deps = [ - "Distributions", - "DocStringExtensions", - "FFTW", - "Interpolations", - "StatsBase", -] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.8" @@ -1426,14 +1009,7 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = [ - "Artifacts", - "LibSSH2_jll", - "Libdl", - "MbedTLS_jll", - "Zlib_jll", - "nghttp2_jll", -] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "8.4.0+0" @@ -1518,15 +1094,15 @@ git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.26" -[deps.LogExpFunctions.extensions] -LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" -LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" -LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" -[deps.LogExpFunctions.weakdeps] -ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1556,63 +1132,7 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = [ - "Animations", - "Base64", - "CRC32c", - "ColorBrewer", - "ColorSchemes", - "ColorTypes", - "Colors", - "Contour", - "DelaunayTriangulation", - "Distributions", - "DocStringExtensions", - "Downloads", - "FFMPEG_jll", - "FileIO", - "FilePaths", - "FixedPointNumbers", - "Formatting", - "FreeType", - "FreeTypeAbstraction", - "GeometryBasics", - "GridLayoutBase", - "ImageIO", - "InteractiveUtils", - "IntervalArithmetic", - "IntervalSets", - "Isoband", - "KernelDensity", - "LaTeXStrings", - "LinearAlgebra", - "MacroTools", - "MakieCore", - "Markdown", - "MathTeXEngine", - "Observables", - "OffsetArrays", - "Packing", - "PlotUtils", - "PolygonOps", - "PrecompileTools", - "Printf", - "REPL", - "Random", - "RelocatableFolders", - "Scratch", - "ShaderAbstractions", - "Showoff", - "SignedDistanceFields", - "SparseArrays", - "StableHashTraits", - "Statistics", - "StatsBase", - "StatsFuns", - "StructArrays", - "TriplotBase", - "UnicodeFun", -] +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalArithmetic", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] git-tree-sha1 = "40c5dfbb99c91835171536cd571fe6f1ba18ff97" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" version = "0.20.7" @@ -1633,40 +1153,13 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathOptInterface]] -deps = [ - "BenchmarkTools", - "CodecBzip2", - "CodecZlib", - "DataStructures", - "ForwardDiff", - "JSON", - "LinearAlgebra", - "MutableArithmetics", - "NaNMath", - "OrderedCollections", - "PrecompileTools", - "Printf", - "SparseArrays", - "SpecialFunctions", - "Test", - "Unicode", -] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] git-tree-sha1 = "569a003f93d7c64068d3afaab908d21f67a22cd5" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" version = "1.25.3" [[deps.MathTeXEngine]] -deps = [ - "AbstractTrees", - "Automa", - "DataStructures", - "FreeTypeAbstraction", - "GeometryBasics", - "LaTeXStrings", - "REPL", - "RelocatableFolders", - "UnicodeFun", -] +deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" version = "0.5.7" @@ -1689,32 +1182,7 @@ uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.1.0" [[deps.MixedModels]] -deps = [ - "Arrow", - "BSplineKit", - "DataAPI", - "Distributions", - "GLM", - "JSON3", - "LinearAlgebra", - "Markdown", - "MixedModelsDatasets", - "NLopt", - "PooledArrays", - "PrecompileTools", - "ProgressMeter", - "Random", - "SparseArrays", - "StaticArrays", - "Statistics", - "StatsAPI", - "StatsBase", - "StatsFuns", - "StatsModels", - "StructTypes", - "Tables", - "TypedTables", -] +deps = ["Arrow", "BSplineKit", "DataAPI", "Distributions", "GLM", "JSON3", "LinearAlgebra", "Markdown", "MixedModelsDatasets", "NLopt", "PooledArrays", "PrecompileTools", "ProgressMeter", "Random", "SparseArrays", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels", "StructTypes", "Tables", "TypedTables"] git-tree-sha1 = "89a42cbdaf9148d18ea190844fc905ee93874275" uuid = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316" version = "4.23.0" @@ -1773,8 +1241,8 @@ uuid = "76087f3c-5699-56af-9a33-bf431cd00edd" version = "1.0.2" weakdeps = ["MathOptInterface"] -[deps.NLopt.extensions] -NLoptMathOptInterfaceExt = ["MathOptInterface"] + [deps.NLopt.extensions] + NLoptMathOptInterfaceExt = ["MathOptInterface"] [[deps.NLopt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1789,30 +1257,13 @@ uuid = "15e1cf62-19b3-5cfa-8e77-841668bca605" version = "0.4.3" [[deps.NRRD]] -deps = [ - "CodecZlib", - "FileIO", - "ImageAxes", - "ImageCore", - "Mmap", - "Printf", - "Quaternions", - "StaticArrays", - "Unitful", -] +deps = ["CodecZlib", "FileIO", "ImageAxes", "ImageCore", "Mmap", "Printf", "Quaternions", "StaticArrays", "Unitful"] git-tree-sha1 = "1631613de2c328e9fdea1a1d2f8b6b14ed69448b" uuid = "9bb6cfbd-7763-5393-b1b5-1c8e09872146" version = "0.6.5" [[deps.NWBStream]] -deps = [ - "CondaPkg", - "DataFrames", - "DelimitedFiles", - "Downloads", - "Pkg", - "PythonCall", -] +deps = ["CondaPkg", "DataFrames", "DelimitedFiles", "Downloads", "Pkg", "PythonCall"] git-tree-sha1 = "bb9c1f37a742d938fff7097cbc192729d7ac0106" uuid = "5982c9a4-5774-4415-9796-801a4f82b4d6" version = "0.1.0" @@ -1836,30 +1287,24 @@ uuid = "46757867-2c16-5918-afeb-47bfcb05e46a" version = "0.4.6" weakdeps = ["Graphs"] -[deps.NetworkLayout.extensions] -NetworkLayoutGraphsExt = "Graphs" + [deps.NetworkLayout.extensions] + NetworkLayoutGraphsExt = "Graphs" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Normalization]] -deps = [ - "Accessors", - "JuliennedArrays", - "LinearAlgebra", - "Statistics", - "StatsAPI", -] +deps = ["Accessors", "JuliennedArrays", "LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "15e38c731d861896dc34c6c6f389dcb6ff54a15f" uuid = "be38d6a3-8366-4a42-ad57-222272b5bbe7" version = "0.6.0" weakdeps = ["DataFrames", "DimensionalData", "Unitful"] -[deps.Normalization.extensions] -DataFramesExt = "DataFrames" -DimensionalDataExt = "DimensionalData" -UnitfulExt = "Unitful" + [deps.Normalization.extensions] + DataFramesExt = "DataFrames" + DimensionalDataExt = "DimensionalData" + UnitfulExt = "Unitful" [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" @@ -1872,8 +1317,8 @@ uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" version = "1.13.0" weakdeps = ["Adapt"] -[deps.OffsetArrays.extensions] -OffsetArraysAdaptExt = "Adapt" + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1884,7 +1329,7 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+2" +version = "0.3.23+4" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1910,33 +1355,13 @@ uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" version = "3.0.13+0" [[deps.OpenSpecFun_jll]] -deps = [ - "Artifacts", - "CompilerSupportLibraries_jll", - "JLLWrappers", - "Libdl", - "Pkg", -] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Optim]] -deps = [ - "Compat", - "FillArrays", - "ForwardDiff", - "LineSearches", - "LinearAlgebra", - "MathOptInterface", - "NLSolversBase", - "NaNMath", - "Parameters", - "PositiveFactorizations", - "Printf", - "SparseArrays", - "StatsBase", -] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] git-tree-sha1 = "d024bfb56144d947d4fafcd9cb5cafbe3410b133" uuid = "429524aa-4258-5aef-a3af-852621145aeb" version = "1.9.2" @@ -1964,14 +1389,7 @@ uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" version = "0.11.31" [[deps.PNGFiles]] -deps = [ - "Base64", - "CEnum", - "ImageCore", - "IndirectArrays", - "OffsetArrays", - "libpng_jll", -] +deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.3" @@ -1989,17 +1407,7 @@ uuid = "5432bcbf-9aad-5242-b902-cca2824c8663" version = "0.5.12" [[deps.Pango_jll]] -deps = [ - "Artifacts", - "Cairo_jll", - "Fontconfig_jll", - "FreeType2_jll", - "FriBidi_jll", - "Glib_jll", - "HarfBuzz_jll", - "JLLWrappers", - "Libdl", -] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "4745216e94f71cb768d58330b059c9b76f32cb66" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.50.14+0" @@ -2041,37 +1449,13 @@ uuid = "3bbf5609-3e7b-44cd-8549-7c69f321e792" version = "0.6.1" [[deps.Pixman_jll]] -deps = [ - "Artifacts", - "CompilerSupportLibraries_jll", - "JLLWrappers", - "LLVMOpenMP_jll", - "Libdl", -] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.42.2+0" [[deps.Pkg]] -deps = [ - "Artifacts", - "Dates", - "Downloads", - "FileWatching", - "LibGit2", - "Libdl", - "Logging", - "Markdown", - "Printf", - "REPL", - "Random", - "SHA", - "Serialization", - "TOML", - "Tar", - "UUIDs", - "p7zip_jll", -] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" version = "1.10.0" @@ -2082,16 +1466,7 @@ uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.3" [[deps.PlotUtils]] -deps = [ - "ColorSchemes", - "Colors", - "Dates", - "PrecompileTools", - "Printf", - "Random", - "Reexport", - "Statistics", -] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" @@ -2137,16 +1512,7 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[deps.PrettyTables]] -deps = [ - "Crayons", - "LaTeXStrings", - "Markdown", - "PrecompileTools", - "Printf", - "Reexport", - "StringManipulation", - "Tables", -] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" version = "2.3.1" @@ -2178,22 +1544,10 @@ uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.9.0" [[deps.PythonCall]] -deps = [ - "CondaPkg", - "Dates", - "Libdl", - "MacroTools", - "Markdown", - "Pkg", - "REPL", - "Requires", - "Serialization", - "Tables", - "UnsafePointers", -] -git-tree-sha1 = "4999b3e4e9bdeba0b61ede19cc45a2128db21cdc" +deps = ["CondaPkg", "Dates", "Libdl", "MacroTools", "Markdown", "Pkg", "REPL", "Requires", "Serialization", "Tables", "UnsafePointers"] +git-tree-sha1 = "0fe6664f742903eab8929586af78e10a51b33577" uuid = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" -version = "0.9.15" +version = "0.9.19" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -2233,8 +1587,8 @@ uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.5" weakdeps = ["FixedPointNumbers"] -[deps.Ratios.extensions] -RatiosFixedPointNumbersExt = "FixedPointNumbers" + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -2289,17 +1643,17 @@ git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" version = "2.1.2" -[deps.Roots.extensions] -RootsForwardDiffExt = "ForwardDiff" -RootsIntervalRootFindingExt = "IntervalRootFinding" -RootsSymPyExt = "SymPy" -RootsSymPyPythonCallExt = "SymPyPythonCall" + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" -[deps.Roots.weakdeps] -ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" -IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" -SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" -SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" [[deps.RoundingEmulator]] git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b" @@ -2332,16 +1686,7 @@ uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.1" [[deps.ShaderAbstractions]] -deps = [ - "ColorTypes", - "FixedPointNumbers", - "GeometryBasics", - "LinearAlgebra", - "Observables", - "StaticArrays", - "StructArrays", - "Tables", -] +deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8" uuid = "65257c39-d410-5151-9873-9b3e5be5013e" version = "0.4.1" @@ -2368,24 +1713,7 @@ uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96" version = "0.4.0" [[deps.SimpleGraphs]] -deps = [ - "AbstractLattices", - "Combinatorics", - "DataStructures", - "IterTools", - "LightXML", - "LinearAlgebra", - "LinearAlgebraX", - "Optim", - "Primes", - "Random", - "RingLists", - "SimplePartitions", - "SimplePolynomials", - "SimpleRandom", - "SparseArrays", - "Statistics", -] +deps = ["AbstractLattices", "Combinatorics", "DataStructures", "IterTools", "LightXML", "LinearAlgebra", "LinearAlgebraX", "Optim", "Primes", "Random", "RingLists", "SimplePartitions", "SimplePolynomials", "SimpleRandom", "SparseArrays", "Statistics"] git-tree-sha1 = "f65caa24a622f985cc341de81d3f9744435d0d0f" uuid = "55797a34-41de-5266-9ec1-32ac4eb504d3" version = "0.8.6" @@ -2421,15 +1749,7 @@ uuid = "47aef6b3-ad0c-573a-a1e2-d07658019622" version = "1.4.0" [[deps.Sixel]] -deps = [ - "Dates", - "FileIO", - "ImageCore", - "IndirectArrays", - "OffsetArrays", - "REPL", - "libsixel_jll", -] +deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.3" @@ -2449,19 +1769,14 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" [[deps.SpecialFunctions]] -deps = [ - "IrrationalConstants", - "LogExpFunctions", - "OpenLibm_jll", - "OpenSpecFun_jll", -] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.3.1" weakdeps = ["ChainRulesCore"] -[deps.SpecialFunctions.extensions] -SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.SplitApplyCombine]] deps = ["Dictionaries", "Indexing"] @@ -2494,9 +1809,9 @@ uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.9.2" weakdeps = ["ChainRulesCore", "Statistics"] -[deps.StaticArrays.extensions] -StaticArraysChainRulesCoreExt = "ChainRulesCore" -StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -2515,55 +1830,24 @@ uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" version = "1.7.0" [[deps.StatsBase]] -deps = [ - "DataAPI", - "DataStructures", - "LinearAlgebra", - "LogExpFunctions", - "Missings", - "Printf", - "Random", - "SortingAlgorithms", - "SparseArrays", - "Statistics", - "StatsAPI", -] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.2" [[deps.StatsFuns]] -deps = [ - "HypergeometricFunctions", - "IrrationalConstants", - "LogExpFunctions", - "Reexport", - "Rmath", - "SpecialFunctions", -] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] -[deps.StatsFuns.extensions] -StatsFunsChainRulesCoreExt = "ChainRulesCore" -StatsFunsInverseFunctionsExt = "InverseFunctions" + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" [[deps.StatsModels]] -deps = [ - "DataAPI", - "DataStructures", - "LinearAlgebra", - "Printf", - "REPL", - "ShiftedArrays", - "SparseArrays", - "StatsAPI", - "StatsBase", - "StatsFuns", - "Tables", -] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" version = "0.7.3" @@ -2575,14 +1859,7 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = [ - "Adapt", - "ConstructionBase", - "DataAPI", - "GPUArraysCore", - "StaticArraysCore", - "Tables", -] +deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "1b0b1205a56dc288b71b1961d48e351520702e24" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" version = "0.6.17" @@ -2620,14 +1897,7 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = [ - "DataAPI", - "DataValueInterfaces", - "IteratorInterfaceExtensions", - "LinearAlgebra", - "OrderedCollections", - "TableTraits", -] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" version = "1.11.1" @@ -2648,105 +1918,52 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.TiffImages]] -deps = [ - "ColorTypes", - "DataStructures", - "DocStringExtensions", - "FileIO", - "FixedPointNumbers", - "IndirectArrays", - "Inflate", - "Mmap", - "OffsetArrays", - "PkgVersion", - "ProgressMeter", - "UUIDs", -] +deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" version = "0.6.8" [[deps.TimeZones]] -deps = [ - "Artifacts", - "Dates", - "Downloads", - "InlineStrings", - "LazyArtifacts", - "Mocking", - "Printf", - "Scratch", - "TZJData", - "Unicode", - "p7zip_jll", -] +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" version = "1.13.0" weakdeps = ["RecipesBase"] -[deps.TimeZones.extensions] -TimeZonesRecipesBaseExt = "RecipesBase" + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" [[deps.TimeseriesFeatures]] -deps = [ - "DimensionalData", - "LinearAlgebra", - "ProgressLogging", - "Reexport", - "Requires", - "Statistics", -] +deps = ["DimensionalData", "LinearAlgebra", "ProgressLogging", "Reexport", "Requires", "Statistics"] git-tree-sha1 = "32ab4cd66a23ed87f52532ec77c26e0f4e98ab9a" uuid = "f3112013-b923-4dfa-b867-8806c885f823" version = "0.4.0" [[deps.TimeseriesTools]] -deps = [ - "Dates", - "DelimitedFiles", - "DimensionalData", - "Distributions", - "FFTW", - "FileIO", - "GeometryBasics", - "IntervalSets", - "JSON", - "LaTeXStrings", - "LinearAlgebra", - "MakieCore", - "Normalization", - "Peaks", - "Random", - "Reexport", - "Requires", - "SparseArrays", - "Statistics", - "Unitful", -] +deps = ["Dates", "DelimitedFiles", "DimensionalData", "Distributions", "FFTW", "FileIO", "GeometryBasics", "IntervalSets", "JSON", "LaTeXStrings", "LinearAlgebra", "MakieCore", "Normalization", "Peaks", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "Unitful"] git-tree-sha1 = "a374a75359c7ce38dde9b9804ebd490c06fad844" repo-rev = "main" repo-url = "https://github.com/brendanjohnharris/TimeseriesTools.jl.git" uuid = "380cddd1-6ef2-46ca-b087-e7151fb095ff" version = "0.3.0" -[deps.TimeseriesTools.extensions] -CUDAExt = ["CUDA", "ContinuousWavelets"] -ContinuousWaveletsExt = ["ContinuousWavelets", "Mmap"] -DierckxExt = ["Dierckx"] -GeneralizedPhase = ["GeneralizedPhase"] -NaturalNeighboursExt = ["NaturalNeighbours"] - -[deps.TimeseriesTools.weakdeps] -CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" -ContinuousWavelets = "96eb917e-2868-4417-9cb6-27e7ff17528f" -DSP = "717857b8-e6f2-59f4-9121-6e50c889abd2" -Dierckx = "39dd38d3-220a-591b-8e3c-4c3a8c710a94" -GeneralizedPhase = "13235c25-d339-4138-a8bf-65c4e89d8d0a" -Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -Mmap = "a63ad114-7e13-5084-954f-fe012c677804" -NaturalNeighbours = "f16ad982-4edb-46b1-8125-78e5a8b5a9e6" -TimeseriesSurrogates = "c804724b-8c18-5caa-8579-6025a0767c70" + [deps.TimeseriesTools.extensions] + CUDAExt = ["CUDA", "ContinuousWavelets"] + ContinuousWaveletsExt = ["ContinuousWavelets", "Mmap"] + DierckxExt = ["Dierckx"] + GeneralizedPhase = ["GeneralizedPhase"] + NaturalNeighboursExt = ["NaturalNeighbours"] + + [deps.TimeseriesTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ContinuousWavelets = "96eb917e-2868-4417-9cb6-27e7ff17528f" + DSP = "717857b8-e6f2-59f4-9121-6e50c889abd2" + Dierckx = "39dd38d3-220a-591b-8e3c-4c3a8c710a94" + GeneralizedPhase = "13235c25-d339-4138-a8bf-65c4e89d8d0a" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Mmap = "a63ad114-7e13-5084-954f-fe012c677804" + NaturalNeighbours = "f16ad982-4edb-46b1-8125-78e5a8b5a9e6" + TimeseriesSurrogates = "c804724b-8c18-5caa-8579-6025a0767c70" [[deps.TranscodingStreams]] git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" @@ -2754,8 +1971,8 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.10.3" weakdeps = ["Random", "Test"] -[deps.TranscodingStreams.extensions] -TestExt = ["Test", "Random"] + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" @@ -2768,14 +1985,7 @@ uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" version = "1.5.0" [[deps.TypedTables]] -deps = [ - "Adapt", - "Dictionaries", - "Indexing", - "SplitApplyCombine", - "Tables", - "Unicode", -] +deps = ["Adapt", "Dictionaries", "Indexing", "SplitApplyCombine", "Tables", "Unicode"] git-tree-sha1 = "84fd7dadde577e01eb4323b7e7b9cb51c62c60d4" uuid = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" version = "1.4.6" @@ -2805,9 +2015,9 @@ uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] -[deps.Unitful.extensions] -ConstructionBaseUnitfulExt = "ConstructionBase" -InverseFunctionsUnitfulExt = "InverseFunctions" + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" [[deps.UnsafePointers]] git-tree-sha1 = "c81331b3b2e60a982be57c046ec91f599ede674a" @@ -2838,29 +2048,13 @@ uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.12.2+0" [[deps.XSLT_jll]] -deps = [ - "Artifacts", - "JLLWrappers", - "Libdl", - "Libgcrypt_jll", - "Libgpg_error_jll", - "Libiconv_jll", - "Pkg", - "XML2_jll", - "Zlib_jll", -] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.34+0" [[deps.Xorg_libX11_jll]] -deps = [ - "Artifacts", - "JLLWrappers", - "Libdl", - "Xorg_libxcb_jll", - "Xorg_xtrans_jll", -] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.8.6+0" @@ -2896,15 +2090,7 @@ uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" version = "0.1.1+0" [[deps.Xorg_libxcb_jll]] -deps = [ - "Artifacts", - "JLLWrappers", - "Libdl", - "XSLT_jll", - "Xorg_libXau_jll", - "Xorg_libXdmcp_jll", - "Xorg_libpthread_stubs_jll", -] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" version = "1.15.0+0" @@ -2951,17 +2137,7 @@ uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" version = "3.4.0+0" [[deps.libass_jll]] -deps = [ - "Artifacts", - "Bzip2_jll", - "FreeType2_jll", - "FriBidi_jll", - "HarfBuzz_jll", - "JLLWrappers", - "Libdl", - "Pkg", - "Zlib_jll", -] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" @@ -2984,14 +2160,7 @@ uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" version = "1.6.42+0" [[deps.libsixel_jll]] -deps = [ - "Artifacts", - "JLLWrappers", - "JpegTurbo_jll", - "Libdl", - "Pkg", - "libpng_jll", -] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" version = "1.10.3+0" diff --git a/paper/Criticality.jl/Project.toml b/paper/Criticality.jl/Project.toml index 6c90c57..96b8bf7 100644 --- a/paper/Criticality.jl/Project.toml +++ b/paper/Criticality.jl/Project.toml @@ -1,5 +1,6 @@ [deps] AllenNeuropixelsBase = "0b0e28cf-a3af-44db-8bea-1c4507018d35" +AllenSDK = "9d22b198-c11d-497b-9ac7-6add78eade21" AnovaMixedModels = "6832ca0c-c2dd-4d0c-851a-521ca5db42f5" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" Catch22 = "acdeb78f-3d39-4310-8fdf-6d75c17c6d5a" @@ -16,7 +17,32 @@ JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" NPZ = "15e1cf62-19b3-5cfa-8e77-841668bca605" Normalization = "be38d6a3-8366-4a42-ad57-222272b5bbe7" +PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" SimpleWeightedGraphs = "47aef6b3-ad0c-573a-a1e2-d07658019622" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" TimeseriesTools = "380cddd1-6ef2-46ca-b087-e7151fb095ff" + +[compat] +AllenNeuropixelsBase = "0.1" +AllenSDK = "0.1" +AnovaMixedModels = "0.2.4" +CairoMakie = "0.11.8" +Catch22 = "0.5" +DSP = "0.7" +DataFrames = "1.6" +DimensionalData = "0.26" +FileIO = "1.16" +GraphMakie = "0.5.9" +HDF5 = "0.17" +HypothesisTests = "0.11" +IntervalSets = "0.7.5" +JLD2 = "0.4.35" +JSON = "0.21.4" +NPZ = "0.4.3" +Normalization = "0.6" +PythonCall = "0.9.16" +SimpleWeightedGraphs = "1.4" +StatsBase = "0.34" +TimeseriesTools = "0.3" +julia = "1.10" diff --git a/paper/Criticality.jl/plot_DistributedCriticality.jl b/paper/Criticality.jl/plot_DistributedCriticality.jl index 5f36351..263bfab 100644 --- a/paper/Criticality.jl/plot_DistributedCriticality.jl +++ b/paper/Criticality.jl/plot_DistributedCriticality.jl @@ -11,10 +11,11 @@ using Catch22 using TimeseriesTools import Base.Iterators.flatten import CairoMakie.RGB +import CairoMakie.Makie: @colorant_str Random.seed!(32) nulls = 1e6 -colors = [Makie.colorant"#D95319", Makie.colorant"#0072BD", Makie.colorant"black"] +colors = [colorant"#D95319", colorant"#0072BD", colorant"black"] file = jldopen("$(@__DIR__)/Data/criticality.jld2") sessions = keys(file) badsessions = [s for s in sessions if isnothing(file[s])]