pyproject.toml

[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "cromshell"
# Version number is automatically set via bumpversion. DO NOT MODIFY:
version = "2.1.1"
readme = "README.md"
description="Command Line Interface (CLI) for Cromwell servers"
authors=[
    {name = "Jonn Smith", email = "jonn@broadinstitute.org"},
    {name = "Louis Bergelson", email = "louisb@broadinstitute.org"},
    {name = "Beri Shifaw", email = "bshifaw@broadinstitute.org"},
]
license={text = "BSD 3-Clause"}
requires-python=">=3.9"
classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: BSD License",
        "Natural Language :: English",
        "Operating System :: OS Independent",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: Implementation :: CPython",
    ]
keywords = [
    "cromwell", "cromshell", "cromwell-cli", "cromwell-client", "cromwell-api",
    "cromwell-rest", "cromwell-utilities", "cromwell-tools",
]
dynamic = ["dependencies", "optional-dependencies"]

[project.urls]
"Homepage" = "https://github.com/broadinstitute/cromshell"
"Bug Tracker" = "https://github.com/broadinstitute/cromshell/issues"

[project.scripts]
cromshell = "cromshell.__main__:main_entry"

# Configuration for the `setuptools` package
[tool.setuptools.dynamic]
dependencies = {file = ["requirements.txt"]}
optional-dependencies = {dev = { file = ["dev-requirements.txt"]}, tests = { file = ["test-requirements.txt"]}}

[tool.setuptools.packages.find]
where = ["src"]
include = ["cromshell*"]

# former setup.cfg configuration for mypy
[tool.mypy."numpy.*"]
ignore_missing_imports = true

[tool.mypy."pysam.*"]
ignore_missing_imports = true

[tool.mypy."pytest.*"]
ignore_missing_imports = true