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Releases: broadinstitute/scp-ingest-pipeline

1.10.0

03 Feb 20:12
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Added

  • adds user identifier in logs from Ingest Pipeline to Bard (#203)

1.9.1

20 Jan 15:13
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Changed

  • ExpressionFiles#get_cell_names_from_study_file_id no longer throws an error when finding other expression matrices without cells associated with them (#201)
  • ExpressionFiles#check_unique_cells will throw an exception if no cell names are passed (#201)

1.9.0

06 Jan 21:11
e143d33
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Added

Validation check to assure cells in cluster file appear in metadata file (#197 )

Fixed

Database contention by introducing jitter (#198 )

1.8.7

17 Dec 16:06
b720fc0
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Added

  • Scratch script for splitting large matrices into smaller chunks for troubleshooting ingest errors (#181)

Changed

Fixed

  • Ingest disorder MTX files with headers (#195)

1.8.6

16 Dec 15:13
de1a015
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Added

  • Scratch script for splitting large matrices into smaller chunks for troubleshooting ingest errors (#181)

Changed

Fixed

  • Correctly scope cell validation query for processed expression matrices (#193)

1.8.5

15 Dec 15:10
590d638
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Added

Changed

Fixed

Fix Merge #190 (#191 )

1.8.4

14 Dec 19:15
df7f8d0
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Added

Changed

Fixed

Fixed how duplicate cells are validated with raw and processed matrices. (#188 )

1.8.3

16 Nov 22:46
465e88a
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Fixed

  • Issue with check_unique_cells() handling of None values causing single_cell_portal_core test failures ( #172 )
  • Resolved "not enough values to unpack (expected 3, got 1)" issue (#174 )

1.8.2

13 Nov 22:33
147385c
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Fixed

  • Fix URL for Bard (#170)

1.8.1

13 Nov 19:40
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Fixed

  • Handle ".gz" file extension, and add extra validations for gzipped files (#167)