v2.1.10.0

• bump viral-core to 2.1.10

v2.1.8.0

bump viral core

v2.1.4.0

bump viral-core

v2.1.3.1

Kraken2 build bugfixes and added test coverage for kraken2

v2.1.3.0

• bump viral-core 2.1.1 to 2.1.3
• decondafy tool classes
• possible fix for kraken2 db build for protein databases, attempt to properly error during database load problems

v2.1.1.0

viral-core 2.1.0.0 -> 2.1.1.0

v2.1.0.0

Updated:

• viral-core 2.0.21 -> 2.1.0

v2.0.21.3

PR #16:

• update kraken2 bioconda from 2.0.8_beta to 2.0.9beta
• add optional args to metagenomics.filter_bam_to_taxa to allow inverse operation (filter out as well as filter in)
• remove gzip output for temp fastq files prior to kraken2 to increase speed

v2.0.21.2

Adds kraken2 support [#15]

v2.0.21.1

• update viral-core to v2.0.21 [#13]
• remove mvicuna deduplication from taxon_filter.deplete [#14, #8]