From 1268eb6f7d318b111d3eb87e90bca4f96dfe7041 Mon Sep 17 00:00:00 2001 From: ekiernan <55763654+ekiernan@users.noreply.github.com> Date: Mon, 16 Sep 2024 15:29:31 -0400 Subject: [PATCH] Lk pd 2744 (#1372) Added deprecation notices for deprecated pipelines --- .../somatic/single_sample/wgs/gdc_genome/README.md | 4 ++-- pipelines/cemba/cemba_methylcseq/README.md | 4 ++-- pipelines/skylab/scATAC/README.md | 4 ++-- pipelines/skylab/smartseq2_multisample/README.md | 4 ++-- pipelines/skylab/smartseq2_single_sample/README.md | 4 ++-- .../CEMBA_MethylC_Seq_Pipeline/CEMBA.methods.md | 0 .../CEMBA_MethylC_Seq_Pipeline/CEMBA.png | Bin .../CEMBA_MethylC_Seq_Pipeline/README.md | 7 ++++++- .../CEMBA_MethylC_Seq_Pipeline/_category_.json | 0 .../CEMBA_MethylC_Seq_Pipeline/diagrampptx_1.pptx | Bin .../GDC.png | Bin .../README.md | 5 +++++ .../_category_.json | 0 .../Single_Cell_ATAC_Seq_Pipeline/README.md | 4 ++++ .../Single_Cell_ATAC_Seq_Pipeline/_category_.json | 0 .../scATAC_diagram.png | Bin .../scATAC_diagram.svg | 0 .../Single_Cell_ATAC_Seq_Pipeline/scatac.methods.md | 0 .../Smart-seq2_Multi_Sample_Pipeline/Loom_schema.md | 0 .../Smart-seq2_Multi_Sample_Pipeline/README.md | 5 +++++ .../_category_.json | 0 .../smart-seq2.methods.md | 0 .../Loom_schema.md | 0 .../Smart-seq2_Single_Sample_Pipeline/README.md | 6 ++++++ .../_category_.json | 0 .../smartseq_image.png | Bin .../smartseq_image.pptx | Bin website/docs/Deprecated_Pipelines/_category_.json | 4 ++++ 28 files changed, 40 insertions(+), 11 deletions(-) rename website/docs/{Pipelines => Deprecated_Pipelines}/CEMBA_MethylC_Seq_Pipeline/CEMBA.methods.md (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/CEMBA_MethylC_Seq_Pipeline/CEMBA.png (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/CEMBA_MethylC_Seq_Pipeline/README.md (98%) rename website/docs/{Pipelines => Deprecated_Pipelines}/CEMBA_MethylC_Seq_Pipeline/_category_.json (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/CEMBA_MethylC_Seq_Pipeline/diagrampptx_1.pptx (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Genomic_Data_Commons_Whole_Genome_Somatic/GDC.png (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Genomic_Data_Commons_Whole_Genome_Somatic/README.md (98%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Genomic_Data_Commons_Whole_Genome_Somatic/_category_.json (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Single_Cell_ATAC_Seq_Pipeline/README.md (98%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Single_Cell_ATAC_Seq_Pipeline/_category_.json (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.png (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.svg (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Single_Cell_ATAC_Seq_Pipeline/scatac.methods.md (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Multi_Sample_Pipeline/Loom_schema.md (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Multi_Sample_Pipeline/README.md (96%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Multi_Sample_Pipeline/_category_.json (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Multi_Sample_Pipeline/smart-seq2.methods.md (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Single_Sample_Pipeline/Loom_schema.md (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Single_Sample_Pipeline/README.md (98%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Single_Sample_Pipeline/_category_.json (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Single_Sample_Pipeline/smartseq_image.png (100%) rename website/docs/{Pipelines => Deprecated_Pipelines}/Smart-seq2_Single_Sample_Pipeline/smartseq_image.pptx (100%) create mode 100644 website/docs/Deprecated_Pipelines/_category_.json diff --git a/pipelines/broad/dna_seq/somatic/single_sample/wgs/gdc_genome/README.md b/pipelines/broad/dna_seq/somatic/single_sample/wgs/gdc_genome/README.md index 6a4b823612..0ddff7318a 100644 --- a/pipelines/broad/dna_seq/somatic/single_sample/wgs/gdc_genome/README.md +++ b/pipelines/broad/dna_seq/somatic/single_sample/wgs/gdc_genome/README.md @@ -1,6 +1,6 @@ -## Announcing a new site for WARP documentation! +## Announcement: GDC is Deprecated 9/12/2024 -GDC Whole Genome Somatic Single Sample documentation has moved! Read more about the [GDC Whole Genome Somatic Single Sample Pipeline](https://broadinstitute.github.io/warp/documentation/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/) on the new [WARP documentation site](https://broadinstitute.github.io/warp/)! +The GDC Whole Genome Somatic Single Sample workflow is deprecated and no longer supported. However, documentation is still available. Read about the [GDC Whole Genome Somatic Single Sample Pipeline](https://broadinstitute.github.io/warp/documentation/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/) on the [WARP documentation site](https://broadinstitute.github.io/warp/)! ## Introduction to the GDC Whole Genome Somatic Single Sample Pipeline The GDC Whole Genome Somatic Single Sample (abbreviated GDC here) pipeline is the alignment and preprocessing workflow for genomic data designed for the National Cancer Institute's [Genomic Data Commons](https://gdc.cancer.gov/about-gdc). diff --git a/pipelines/cemba/cemba_methylcseq/README.md b/pipelines/cemba/cemba_methylcseq/README.md index 8b271a714b..6631964698 100644 --- a/pipelines/cemba/cemba_methylcseq/README.md +++ b/pipelines/cemba/cemba_methylcseq/README.md @@ -1,6 +1,6 @@ -## Announcing a new site for WARP documentation! +## Announcement: CEMBA is Deprecated 9/12/2024 -CEMBA documentation has moved! Read more about the [CEMBA Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/README) on the new [WARP documentation site](https://broadinstitute.github.io/warp/)! +The CEMBA workflow is deprecated and is no longer supported. However, the CEMBA documentation is still available. See [CEMBA Pipeline Overview](https://broadinstitute.github.io/warp/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/README) on the [WARP documentation site](https://broadinstitute.github.io/warp/)! ### CEMBA summary diff --git a/pipelines/skylab/scATAC/README.md b/pipelines/skylab/scATAC/README.md index 53e23745f1..78029b18b4 100644 --- a/pipelines/skylab/scATAC/README.md +++ b/pipelines/skylab/scATAC/README.md @@ -1,7 +1,7 @@ -## Announcing a new site for WARP documentation! +## Announcement: scATAC is Deprecated 9/12/2024 -scATAC documentation has moved! Read more about the [scATAC Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/README) on the new [WARP documentation site](https://broadinstitute.github.io/warp/)! +The scATAC workflow is deprecated and is no longer supported. However, the scATAC documentation is still available. Read more about the [scATAC Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/README) on the [WARP documentation site](https://broadinstitute.github.io/warp/)! ### scATAC summary diff --git a/pipelines/skylab/smartseq2_multisample/README.md b/pipelines/skylab/smartseq2_multisample/README.md index 01d04ece8c..b47e1941d6 100644 --- a/pipelines/skylab/smartseq2_multisample/README.md +++ b/pipelines/skylab/smartseq2_multisample/README.md @@ -1,6 +1,6 @@ -## Announcing a new site for WARP documentation! +## Announcement: Smart-seq2 Multi-Sample is Deprecated 9/12/2024 -Smart-seq2 Multi-Sample documentation has moved! Read more about the [Smart-seq2 Multi-Sample Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/README) on the new [WARP documentation site](https://broadinstitute.github.io/warp/)! +The Smart-seq2 Multi-Sample workflow is deprecated and will no longer be supported. However, documentation is still available. Read about the [Smart-seq2 Multi-Sample Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/README) on the [WARP documentation site](https://broadinstitute.github.io/warp/)! ### Smart-seq2 Multi-Sample summary diff --git a/pipelines/skylab/smartseq2_single_sample/README.md b/pipelines/skylab/smartseq2_single_sample/README.md index 6b00a91baf..59b0303cd5 100644 --- a/pipelines/skylab/smartseq2_single_sample/README.md +++ b/pipelines/skylab/smartseq2_single_sample/README.md @@ -1,6 +1,6 @@ -## Announcing a new site for WARP documentation! +## Announcement: Smart-seq2 Single Sample is Deprecated 9/12/2024 -Smart-seq2 Single Sample documentation has moved! Read more about the [Smart-seq2 Single Sample Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/README) on the new [WARP documentation site](https://broadinstitute.github.io/warp/)! +The Smart-seq2 Single Sample workflow is deprecated and will no longer be supported. However, documentation is still available Read about the [Smart-seq2 Single Sample Pipeline](https://broadinstitute.github.io/warp/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/README) on the [WARP documentation site](https://broadinstitute.github.io/warp/)! ### Smart-seq2 Single Sample summary diff --git a/website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.methods.md b/website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.methods.md similarity index 100% rename from website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.methods.md rename to website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.methods.md diff --git a/website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.png b/website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.png similarity index 100% rename from website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.png rename to website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/CEMBA.png diff --git a/website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/README.md b/website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/README.md similarity index 98% rename from website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/README.md rename to website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/README.md index 3490791d4c..af41088ee8 100644 --- a/website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/README.md +++ b/website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/README.md @@ -2,9 +2,14 @@ sidebar_position: 1 slug: /Pipelines/CEMBA_MethylC_Seq_Pipeline/README --- - # CEMBA Overview +:::warning +9/12/2024 + +We are deprecating the CEMBA pipeline. Although the code will continue to be available, we are no longer supporting it. A possible alternative is the [Single-nucleus Methyl-seq and Chromatin Capture](../../Pipelines/snM3C/README.md) workflow. +::: + | Pipeline Version | Date Updated | Documentation Author | Questions or Feedback | | :----: | :---: | :----: | :--------------: | | [CEMBA_v1.1.6](https://github.com/broadinstitute/warp/releases) | December, 2023 | Elizabeth Kiernan| Please [file an issue in WARP](https://github.com/broadinstitute/warp/issues). | diff --git a/website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/_category_.json b/website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/_category_.json similarity index 100% rename from website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/_category_.json rename to website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/_category_.json diff --git a/website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/diagrampptx_1.pptx b/website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/diagrampptx_1.pptx similarity index 100% rename from website/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/diagrampptx_1.pptx rename to website/docs/Deprecated_Pipelines/CEMBA_MethylC_Seq_Pipeline/diagrampptx_1.pptx diff --git a/website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/GDC.png b/website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/GDC.png similarity index 100% rename from website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/GDC.png rename to website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/GDC.png diff --git a/website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README.md b/website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README.md similarity index 98% rename from website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README.md rename to website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README.md index b7229e55ba..119a867c0a 100644 --- a/website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README.md +++ b/website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README.md @@ -4,6 +4,11 @@ slug: /Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/README --- # Genomic Data Commons (GDC) Whole Genome Somatic Single Sample Overview +:::warning +9/12/2014 + +We are deprecating the Genomic Data Commons Whole Genome Somatic Single Sample Pipeline. Although the code will continue to be available, we are no longer supporting it. +::: | Pipeline Version | Date Updated | Documentation Author | Questions or Feedback | | :----: | :---: | :----: | :--------------: | diff --git a/website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/_category_.json b/website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/_category_.json similarity index 100% rename from website/docs/Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/_category_.json rename to website/docs/Deprecated_Pipelines/Genomic_Data_Commons_Whole_Genome_Somatic/_category_.json diff --git a/website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/README.md b/website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/README.md similarity index 98% rename from website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/README.md rename to website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/README.md index 0512f9290a..d7c14591ad 100644 --- a/website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/README.md +++ b/website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/README.md @@ -4,7 +4,11 @@ slug: /Pipelines/Single_Cell_ATAC_Seq_Pipeline/README --- # scATAC Overview +:::warning +9/12/2024 +We are deprecating the Single-cell ATAC Seq Pipeline. Although the code will continue to be available, we are no longer supporting it. This workflow has been replaced with the [ATAC workflow](../../Pipelines/ATAC/README.md). +::: | Pipeline Version | Date Updated | Documentation Author | Questions or Feedback | | :----: | :---: | :----: | :--------------: | | [scATAC 1.3.2](https://github.com/broadinstitute/warp/releases) | May 2024 | Elizabeth Kiernan | Please [file an issue in WARP](https://github.com/broadinstitute/warp/issues). | diff --git a/website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/_category_.json b/website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/_category_.json similarity index 100% rename from website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/_category_.json rename to website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/_category_.json diff --git a/website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.png b/website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.png similarity index 100% rename from website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.png rename to website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.png diff --git a/website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.svg b/website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.svg similarity index 100% rename from website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.svg rename to website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/scATAC_diagram.svg diff --git a/website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/scatac.methods.md b/website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/scatac.methods.md similarity index 100% rename from website/docs/Pipelines/Single_Cell_ATAC_Seq_Pipeline/scatac.methods.md rename to website/docs/Deprecated_Pipelines/Single_Cell_ATAC_Seq_Pipeline/scatac.methods.md diff --git a/website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/Loom_schema.md b/website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/Loom_schema.md similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/Loom_schema.md rename to website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/Loom_schema.md diff --git a/website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/README.md b/website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/README.md similarity index 96% rename from website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/README.md rename to website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/README.md index 8548f77fe6..5c7935a176 100644 --- a/website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/README.md +++ b/website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/README.md @@ -4,6 +4,11 @@ slug: /Pipelines/Smart-seq2_Multi_Sample_Pipeline/README --- # Smart-seq2 Multi-Sample Overview +:::warning +9/12/2014 + +We are deprecating the Smart-seq2 Multi-Sample Pipeline. Although the code will continue to be available, we are no longer supporting it. For an alternative, see the [Smart-seq2 Single Nucleus Multi Sample workflow](../../Pipelines/Smart-seq2_Single_Nucleus_Multi_Sample_Pipeline/README.md). +::: | Pipeline Version | Date Updated | Documentation Author | Questions or Feedback | | :----: | :---: | :----: | :--------------: | diff --git a/website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/_category_.json b/website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/_category_.json similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/_category_.json rename to website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/_category_.json diff --git a/website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/smart-seq2.methods.md b/website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/smart-seq2.methods.md similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Multi_Sample_Pipeline/smart-seq2.methods.md rename to website/docs/Deprecated_Pipelines/Smart-seq2_Multi_Sample_Pipeline/smart-seq2.methods.md diff --git a/website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/Loom_schema.md b/website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/Loom_schema.md similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/Loom_schema.md rename to website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/Loom_schema.md diff --git a/website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/README.md b/website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/README.md similarity index 98% rename from website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/README.md rename to website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/README.md index b6fd9b967f..5031adfc08 100644 --- a/website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/README.md +++ b/website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/README.md @@ -5,6 +5,12 @@ slug: /Pipelines/Smart-seq2_Single_Sample_Pipeline/README # Smart-seq2 Single Sample Overview +:::warning +9/12/2014 + +We are deprecating the Smart-seq2 Single Sample Pipeline. Although the code will continue to be available, we are no longer supporting it. For an alternative, see the [Smart-seq2 Single Nucleus Multi Sample workflow](../../Pipelines/Smart-seq2_Single_Nucleus_Multi_Sample_Pipeline/README.md). +::: + | Pipeline Version | Date Updated | Documentation Author | Questions or Feedback | | :----: | :---: | :----: | :--------------: | | [smartseq2_v5.1.20](https://github.com/broadinstitute/warp/releases) | February, 2024 | Elizabeth Kiernan | Please [file an issue in WARP](https://github.com/broadinstitute/warp/issues). | diff --git a/website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/_category_.json b/website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/_category_.json similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/_category_.json rename to website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/_category_.json diff --git a/website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.png b/website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.png similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.png rename to website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.png diff --git a/website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.pptx b/website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.pptx similarity index 100% rename from website/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.pptx rename to website/docs/Deprecated_Pipelines/Smart-seq2_Single_Sample_Pipeline/smartseq_image.pptx diff --git a/website/docs/Deprecated_Pipelines/_category_.json b/website/docs/Deprecated_Pipelines/_category_.json new file mode 100644 index 0000000000..28ba8b359f --- /dev/null +++ b/website/docs/Deprecated_Pipelines/_category_.json @@ -0,0 +1,4 @@ +{ + "label": "Deprecated Pipelines", + "position": 100 +}