From 45dcc57fb4007480207102cf48645c08c0c378ec Mon Sep 17 00:00:00 2001 From: sbabyanusha <61431648+sbabyanusha@users.noreply.github.com> Date: Thu, 26 Dec 2024 15:05:54 -0500 Subject: [PATCH] Gene Table Update v6 : migrate outdated gene symbols in data files (#2117) * Gene table Update V6 * sync db --- public/acbc_mskcc_2015/data_cna.txt | 4 +-- public/acc_2019/data_cna.txt | 4 +-- public/acc_tcga/data_cna.txt | 4 +-- public/acc_tcga/data_linear_cna.txt | 4 +-- public/acc_tcga/data_methylation_hm450.txt | 4 +-- public/acc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../acc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/acyc_mskcc_2013/data_cna.txt | 4 +-- .../data_methylation_hm27.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/aml_ohsu_2018/data_mrna_seq_cpm.txt | 4 +-- ...a_mrna_seq_cpm_zscores_ref_all_samples.txt | 4 +-- public/aml_ohsu_2018/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/aml_ohsu_2022/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/aml_target_2018_pub/data_cna.txt | 4 +-- .../data_methylation_hm27.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- .../data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/ampca_bcm_2016/data_mutations.txt | 4 +-- public/angs_painter_2020/data_cna.txt | 2 +- public/angs_project_painter_2018/data_cna.txt | 4 +-- public/asclc_msk_2024/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- public/asclc_msk_2024/data_sv.txt | 4 +-- .../data_RNA_Seq_v2_mRNA_median_Zscores.txt | 4 +-- public/blca_bgi/data_mutations.txt | 4 +-- public/blca_cornell_2016/data_cna.txt | 4 +-- public/blca_cornell_2016/data_log2_cna.txt | 4 +-- public/blca_cornell_2016/data_mutations.txt | 2 +- .../data_mutations.txt | 4 +-- public/blca_msk_tcga_2020/data_cna.txt | 4 +-- public/blca_msk_tcga_2020/data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/blca_msk_tcga_2020/data_mutations.txt | 4 +-- public/blca_msk_tcga_2020/data_sv.txt | 4 +-- .../data_methylation_hm27.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/blca_tcga/data_cna.txt | 4 +-- public/blca_tcga/data_linear_cna.txt | 4 +-- public/blca_tcga/data_methylation_hm450.txt | 4 +-- public/blca_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/blca_tcga/data_mutations.txt | 4 +-- .../blca_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- .../blca_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/blca_tcga_pub/data_cna.txt | 4 +-- public/blca_tcga_pub/data_linear_cna.txt | 4 +-- .../blca_tcga_pub/data_methylation_hm450.txt | 4 +-- .../blca_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/blca_tcga_pub/data_mutations.txt | 4 +-- public/blca_tcga_pub_2017/data_cna.txt | 4 +-- public/blca_tcga_pub_2017/data_linear_cna.txt | 4 +-- .../data_methylation_hm450.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/blca_tcga_pub_2017/data_mutations.txt | 2 +- public/brain_cptac_2020/data_cna.txt | 4 +-- public/brain_cptac_2020/data_linear_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- public/brca_bccrc/data_mutations.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mutations.txt | 4 +-- public/brca_cptac_2020/data_cna.txt | 4 +-- public/brca_cptac_2020/data_log2_cna.txt | 4 +-- public/brca_cptac_2020/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- public/brca_cptac_2020/data_mutations.txt | 4 +-- public/brca_dfci_2020/data_mutations.txt | 4 +-- public/brca_igr_2015/data_cna.txt | 4 +-- public/brca_igr_2015/data_mutations.txt | 4 +-- public/brca_mbcproject_2022/data_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- .../brca_mbcproject_wagle_2017/data_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../data_mutations.txt | 2 +- public/brca_metabric/data_cna.txt | 4 +-- .../data_methylation_promoters_rrbs.txt | 4 +-- .../data_mrna_illumina_microarray.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/brca_sanger/data_mutations.txt | 4 +-- public/brca_smc_2018/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- public/brca_tcga/data_cna.txt | 4 +-- public/brca_tcga/data_linear_cna.txt | 4 +-- public/brca_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/brca_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/brca_tcga/data_mutations.txt | 4 +-- .../brca_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_mutations.txt | 2 +- .../brca_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/brca_tcga_pub/data_cna.txt | 4 +-- public/brca_tcga_pub/data_linear_cna.txt | 4 +-- .../brca_tcga_pub/data_methylation_hm27.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_mirna_merged_zscores.txt | 4 +-- public/brca_tcga_pub/data_mutations.txt | 4 +-- public/brca_tcga_pub2015/data_cna.txt | 4 +-- public/brca_tcga_pub2015/data_linear_cna.txt | 4 +-- .../data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/brca_tcga_pub2015/data_mutations.txt | 2 +- public/ccle_broad_2019/data_cna.txt | 4 +-- public/ccle_broad_2019/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/ccle_broad_2019/data_mutations.txt | 4 +-- public/ccle_broad_2019/data_sv.txt | 4 +-- public/ccrcc_irc_2014/data_mutations.txt | 4 +-- public/ccrcc_utokyo_2013/data_mutations.txt | 4 +-- public/cellline_ccle_broad/data_cna.txt | 4 +-- public/cellline_ccle_broad/data_log2_cna.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 2 +- public/cellline_nci60/data_cna.txt | 4 +-- public/cellline_nci60/data_linear_cna.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/cellline_nci60/data_mutations.txt | 4 +-- public/cesc_tcga/data_cna.txt | 4 +-- public/cesc_tcga/data_linear_cna.txt | 4 +-- public/cesc_tcga/data_methylation_hm450.txt | 4 +-- public/cesc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/cesc_tcga/data_mutations.txt | 4 +-- .../cesc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../cesc_tcga_pan_can_atlas_2018/data_sv.txt | 2 +- public/chol_tcga/data_cna.txt | 4 +-- public/chol_tcga/data_linear_cna.txt | 4 +-- public/chol_tcga/data_methylation_hm450.txt | 4 +-- public/chol_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/chol_tcga/data_mutations.txt | 4 +-- .../chol_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- public/cll_broad_2015/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- public/cll_broad_2022/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- public/cll_broad_2022/data_mutations.txt | 4 +-- public/cll_broad_2022/data_sv.txt | 4 +-- public/cll_iuopa_2015/data_mutations.txt | 4 +-- public/coad_cptac_2019/data_cna.txt | 4 +-- public/coad_cptac_2019/data_log2_cna.txt | 4 +-- .../coad_cptac_2019/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- public/coad_cptac_2019/data_mutations.txt | 4 +-- public/coad_silu_2022/data_cna.txt | 4 +-- .../data_mrna_seq_expression.txt | 4 +-- ...seq_expression_zscores_ref_all_samples.txt | 4 +-- public/coad_silu_2022/data_mutations.txt | 4 +-- .../{ => genesets}/data_gsva_pvalues.txt | 0 .../{ => genesets}/data_gsva_scores.txt | 0 .../{ => genesets}/meta_gsva_pvalues.txt | 0 .../{ => genesets}/meta_gsva_scores.txt | 0 public/coadread_cass_2020/data_mutations.txt | 4 +-- public/coadread_dfci_2016/data_mutations.txt | 4 +-- public/coadread_genentech/data_mutations.txt | 4 +-- public/coadread_tcga/data_cna.txt | 4 +-- public/coadread_tcga/data_linear_cna.txt | 4 +-- .../coadread_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../coadread_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/coadread_tcga/data_mutations.txt | 2 +- .../data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- public/coadread_tcga_pub/data_cna.txt | 4 +-- public/coadread_tcga_pub/data_linear_cna.txt | 4 +-- .../data_methylation_hm27.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_mirna_merged_zscores.txt | 4 +-- .../coadread_tcga_pub/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/crc_hta11_htan_2021/data_mutations.txt | 4 +-- .../data_pseudo_bulk_rna_seq_expression.txt | 4 +-- ...seq_expression_zscores_ref_all_samples.txt | 4 +-- public/cscc_hgsc_bcm_2014/data_mutations.txt | 4 +-- public/cscc_ranson_2022/data_mutations.txt | 4 +-- public/cscc_ucsf_2021/data_mutations.txt | 4 +-- public/desm_broad_2015/data_mutations.txt | 4 +-- public/difg_glass/data_cna.txt | 4 +-- public/difg_glass/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- public/difg_glass/data_mutations.txt | 4 +-- public/difg_glass/data_mutations_1.txt | 4 +-- public/difg_glass/data_mutations_2.txt | 4 +-- public/difg_glass_2019/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/difg_glass_2019/data_mutations.txt | 4 +-- public/dlbc_broad_2012/data_mutations.txt | 2 +- public/dlbc_tcga/data_cna.txt | 4 +-- public/dlbc_tcga/data_linear_cna.txt | 4 +-- public/dlbc_tcga/data_methylation_hm450.txt | 4 +-- public/dlbc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/dlbc_tcga/data_mutations.txt | 2 +- .../dlbc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/dlbcl_dfci_2018/data_mutations.txt | 2 +- public/egc_tmucih_2015/data_mutations.txt | 4 +-- public/egc_trap_ccr_msk_2023/data_cna.txt | 4 +-- public/egc_trap_msk_2020/data_cna.txt | 4 +-- .../es_dfarber_broad_2014/data_mutations.txt | 4 +-- public/es_iocurie_2014/data_mutations.txt | 4 +-- public/esca_tcga/data_cna.txt | 4 +-- public/esca_tcga/data_linear_cna.txt | 4 +-- public/esca_tcga/data_methylation_hm450.txt | 4 +-- public/esca_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/esca_tcga/data_mutations.txt | 4 +-- .../esca_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- public/escc_icgc/data_mutations.txt | 4 +-- public/gbc_shanghai_2014/data_mutations.txt | 4 +-- public/gbm_cptac_2021/data_cna.txt | 4 +-- public/gbm_cptac_2021/data_log2_cna.txt | 4 +-- .../gbm_cptac_2021/data_methylation_epic.txt | 4 +-- public/gbm_cptac_2021/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_fpkm_zscores_ref_diploid_samples.txt | 4 +-- .../gbm_mayo_pdx_sarkaria_2019/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_methylation_hm450.txt | 4 +-- .../data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/gbm_tcga/data_cna.txt | 4 +-- public/gbm_tcga/data_linear_cna.txt | 4 +-- public/gbm_tcga/data_methylation_hm27.txt | 4 +-- public/gbm_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_affymetrix_microarray.txt | 4 +-- ...rix_microarray_zscores_ref_all_samples.txt | 4 +-- .../gbm_tcga/data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/gbm_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/gbm_tcga/data_mutations.txt | 4 +-- .../gbm_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- .../gbm_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/gbm_tcga_pub/data_methylation_hm27.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_mirna_merged_zscores.txt | 4 +-- public/gbm_tcga_pub2013/data_cna.txt | 4 +-- public/gbm_tcga_pub2013/data_linear_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/gbm_tcga_pub2013/data_mutations.txt | 4 +-- public/gist_msk_2023/data_mutations.txt | 4 +-- public/hcc_clca_2024/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- public/hcc_clca_2024/data_mutations.txt | 4 +-- public/hcc_inserm_fr_2015/data_mutations.txt | 4 +-- public/hcc_meric_2021/data_mutations.txt | 2 +- public/hcc_msk_2024/data_sv.txt | 4 +-- public/hccihch_pku_2019/data_sv.txt | 4 +-- public/hnsc_broad/data_mutations.txt | 4 +-- .../hnsc_mdanderson_2013/data_mutations.txt | 4 +-- public/hnsc_tcga/data_cna.txt | 4 +-- public/hnsc_tcga/data_linear_cna.txt | 4 +-- public/hnsc_tcga/data_methylation_hm450.txt | 4 +-- public/hnsc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/hnsc_tcga/data_mutations.txt | 4 +-- .../hnsc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../hnsc_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/hnsc_tcga_pub/data_cna.txt | 4 +-- public/hnsc_tcga_pub/data_linear_cna.txt | 4 +-- .../hnsc_tcga_pub/data_methylation_hm450.txt | 4 +-- .../hnsc_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/hnsc_tcga_pub/data_mutations.txt | 4 +-- public/kich_tcga/data_cna.txt | 4 +-- public/kich_tcga/data_linear_cna.txt | 4 +-- public/kich_tcga/data_methylation_hm450.txt | 4 +-- public/kich_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../kich_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- public/kich_tcga_pub/data_cna.txt | 4 +-- public/kich_tcga_pub/data_linear_cna.txt | 4 +-- .../kich_tcga_pub/data_methylation_hm450.txt | 4 +-- .../kich_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/kirc_tcga/data_cna.txt | 4 +-- public/kirc_tcga/data_linear_cna.txt | 4 +-- public/kirc_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/kirc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/kirc_tcga/data_mutations.txt | 4 +-- .../kirc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- public/kirc_tcga_pub/data_cna.txt | 4 +-- public/kirc_tcga_pub/data_linear_cna.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 2 +- .../data_mrna_mirna_merged_zscores.txt | 4 +-- .../kirc_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/kirc_tcga_pub/data_mutations.txt | 4 +-- public/kirp_tcga/data_cna.txt | 4 +-- public/kirp_tcga/data_linear_cna.txt | 4 +-- public/kirp_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/kirp_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/kirp_tcga/data_mutations.txt | 2 +- .../kirp_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- public/laml_tcga/data_cna.txt | 4 +-- public/laml_tcga/data_linear_cna.txt | 4 +-- public/laml_tcga/data_methylation_hm27.txt | 4 +-- public/laml_tcga/data_methylation_hm450.txt | 4 +-- public/laml_tcga/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/laml_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/laml_tcga/data_mutations.txt | 4 +-- .../laml_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- public/laml_tcga_pub/data_cna.txt | 4 +-- public/laml_tcga_pub/data_linear_cna.txt | 4 +-- .../laml_tcga_pub/data_methylation_hm450.txt | 4 +-- .../laml_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/laml_tcga_pub/data_mutations.txt | 4 +-- public/lgg_tcga/data_cna.txt | 4 +-- public/lgg_tcga/data_linear_cna.txt | 4 +-- public/lgg_tcga/data_methylation_hm450.txt | 4 +-- .../lgg_tcga/data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/lgg_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../lgg_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/lgg_ucsf_2014/data_mutations.txt | 4 +-- public/lgggbm_tcga_pub/data_cna.txt | 4 +-- public/lgggbm_tcga_pub/data_log2_cna.txt | 4 +-- public/lgggbm_tcga_pub/data_mutations.txt | 4 +-- public/lihc_amc_prv/data_cna.txt | 4 +-- public/lihc_amc_prv/data_mutations.txt | 4 +-- public/lihc_tcga/data_cna.txt | 4 +-- public/lihc_tcga/data_linear_cna.txt | 4 +-- public/lihc_tcga/data_methylation_hm450.txt | 4 +-- public/lihc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/lihc_tcga/data_mutations.txt | 2 +- .../lihc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../lihc_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/luad_broad/data_cna.txt | 4 +-- public/luad_broad/data_mutations.txt | 4 +-- .../luad_cptac_2020/data_methylation_epic.txt | 4 +-- public/luad_cptac_2020/data_mutations.txt | 4 +-- public/luad_msk_npjpo_2021/data_sv.txt | 4 +-- public/luad_mskcc_2015/data_mutations.txt | 4 +-- public/luad_mskcc_2020/data_sv.txt | 4 +-- .../data_mutations.txt | 2 +- public/luad_oncosg_2020/data_cna.txt | 4 +-- public/luad_oncosg_2020/data_mutations.txt | 4 +-- public/luad_tcga/data_cna.txt | 4 +-- public/luad_tcga/data_linear_cna.txt | 4 +-- public/luad_tcga/data_methylation_hm27.txt | 4 +-- public/luad_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/luad_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/luad_tcga/data_mutations.txt | 4 +-- .../luad_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_normals_RNA_Seq_v2_mRNA_median.txt | 4 +-- ...normals_RNA_Seq_v2_mRNA_median_Zscores.txt | 4 +-- .../luad_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/luad_tcga_pub/data_cna.txt | 4 +-- public/luad_tcga_pub/data_linear_cna.txt | 4 +-- .../luad_tcga_pub/data_methylation_hm27.txt | 4 +-- .../luad_tcga_pub/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../luad_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/luad_tcga_pub/data_mutations.txt | 4 +-- public/lung_smc_2016/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- .../lusc_cptac_2021/data_methylation_epic.txt | 4 +-- public/lusc_cptac_2021/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- public/lusc_cptac_2021/data_mutations.txt | 2 +- public/lusc_tcga/data_cna.txt | 4 +-- public/lusc_tcga/data_linear_cna.txt | 4 +-- public/lusc_tcga/data_methylation_hm27.txt | 4 +-- public/lusc_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_affymetrix_microarray.txt | 4 +-- ...rix_microarray_zscores_ref_all_samples.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/lusc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/lusc_tcga/data_mutations.txt | 4 +-- .../lusc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_normals_RNA_Seq_v2_mRNA_median.txt | 4 +-- ...normals_RNA_Seq_v2_mRNA_median_Zscores.txt | 4 +-- public/lusc_tcga_pub/data_cna.txt | 4 +-- public/lusc_tcga_pub/data_linear_cna.txt | 4 +-- .../lusc_tcga_pub/data_methylation_hm27.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/lusc_tcga_pub/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/lusc_tcga_pub/data_mutations.txt | 4 +-- public/mbl_sickkids_2016/data_mutations.txt | 4 +-- public/mbn_mdacc_2013/data_log2_cna.txt | 4 +-- .../data_mrna_affymetrix_microarray.txt | 4 +-- ...rix_microarray_zscores_ref_all_samples.txt | 4 +-- public/mbn_msk_2024/data_mutations.txt | 4 +-- .../data_RNA_Seq_v2_mRNA_median_Zscores.txt | 4 +-- public/mbn_sfu_2023/data_mutations.txt | 4 +-- public/mds_mskcc_2020/data_mutations.txt | 4 +-- public/mel_dfci_2019/data_cna.txt | 4 +-- public/mel_dfci_2019/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- ...na_seq_tpm_zscores_ref_diploid_samples.txt | 4 +-- public/mel_dfci_2019/data_mutations.txt | 4 +-- public/mel_tsam_liang_2017/data_cna.txt | 4 +-- .../data_mrna_seq_fpkm.txt | 2 +- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 2 +- ...a_seq_fpkm_zscores_ref_diploid_samples.txt | 2 +- public/mel_tsam_liang_2017/data_mutations.txt | 4 +-- public/mel_ucla_2016/data_cna.txt | 4 +-- public/mel_ucla_2016/data_mrna_seq_rpkm.txt | 2 +- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 2 +- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 2 +- public/mel_ucla_2016/data_mutations.txt | 2 +- public/meso_tcga/data_cna.txt | 4 +-- public/meso_tcga/data_linear_cna.txt | 4 +-- public/meso_tcga/data_methylation_hm450.txt | 4 +-- public/meso_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/meso_tcga/data_mutations.txt | 4 +-- .../meso_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/mixed_allen_2018/data_mutations.txt | 4 +-- public/mixed_msk_tcga_2021/data_mutations.txt | 4 +-- public/mixed_pipseq_2017/data_mutations.txt | 2 +- public/mm_broad/data_mutations.txt | 2 +- .../data_methylation_450.txt | 4 +-- .../data_methylation_450_Zscores.txt | 4 +-- .../mng_utoronto_2021/data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- ...na_seq_tpm_zscores_ref_diploid_samples.txt | 4 +-- public/mng_utoronto_2021/data_mutations.txt | 4 +-- public/mpcproject_broad_2021/data_cna.txt | 4 +-- public/mpnst_mskcc/data_cna.txt | 4 +-- public/mrt_bcgsc_2016/data_mutations.txt | 4 +-- public/msk_chord_2024/data_mutations.txt | 4 +-- public/msk_chord_2024/data_sv.txt | 4 +-- public/msk_met_2021/data_sv.txt | 4 +-- public/nbl_broad_2013/data_mutations.txt | 2 +- public/nbl_broad_2013/data_sv.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/nbl_ucologne_2015/data_mutations.txt | 4 +-- .../nccrcc_genentech_2014/data_mutations.txt | 4 +-- public/nepc_wcm_2016/data_log2_cna.txt | 4 +-- public/nepc_wcm_2016/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- public/nhl_bcgsc_2011/data_mutations.txt | 4 +-- public/nhl_bcgsc_2013/data_mutations.txt | 4 +-- public/nsclc_mskcc_2018/data_mutations.txt | 4 +-- public/nsclc_tcga_broad_2016/data_cna.txt | 4 +-- .../nsclc_tcga_broad_2016/data_mutations.txt | 4 +-- public/nsclc_tracerx_2017/data_mutations.txt | 4 +-- public/nst_nfosi_ntap/README.md | 7 +++++ .../nst_nfosi_ntap/case_lists/cases_all.txt | 4 +-- .../case_lists/cases_sequenced.txt | 4 +-- .../nst_nfosi_ntap/data_clinical_patient.txt | 4 +-- .../nst_nfosi_ntap/data_clinical_sample.txt | 4 +-- public/nst_nfosi_ntap/data_mrna_seq_tpm.txt | 3 +++ public/nst_nfosi_ntap/data_mutations.txt | 4 +-- public/nst_nfosi_ntap/meta_mrna_seq_tpm.txt | 8 ++++++ public/nst_nfosi_ntap/meta_study.txt | 4 +-- public/ov_tcga/data_cna.txt | 4 +-- public/ov_tcga/data_linear_cna.txt | 4 +-- public/ov_tcga/data_methylation_hm27.txt | 4 +-- .../data_mrna_affymetrix_microarray.txt | 4 +-- ...rix_microarray_zscores_ref_all_samples.txt | 4 +-- .../ov_tcga/data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/ov_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/ov_tcga/data_mutations.txt | 4 +-- .../ov_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/ov_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/ov_tcga_pub/data_cna.txt | 4 +-- public/ov_tcga_pub/data_methylation_hm27.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_mirna_merged_zscores.txt | 4 +-- public/ov_tcga_pub/data_mutations.txt | 4 +-- public/paac_jhu_2014/data_mutations.txt | 4 +-- .../paad_cptac_2021/data_methylation_epic.txt | 4 +-- .../paad_cptac_2021/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/paad_cptac_2021/data_mutations.txt | 4 +-- public/paad_icgc/data_mutations.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- public/paad_qcmg_uq_2016/data_mutations.txt | 4 +-- public/paad_tcga/data_cna.txt | 4 +-- public/paad_tcga/data_linear_cna.txt | 4 +-- public/paad_tcga/data_methylation_hm450.txt | 4 +-- public/paad_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/paad_tcga/data_mutations.txt | 4 +-- .../paad_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/paad_utsw_2015/data_cna.txt | 4 +-- public/paad_utsw_2015/data_mutations.txt | 4 +-- public/pact_jhu_2011/data_mutations.txt | 2 +- public/pan_origimed_2020/data_mutations.txt | 4 +-- public/pancan_pcawg_2020/data_cna.txt | 4 +-- .../pancan_pcawg_2020/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- public/panet_arcnet_2017/data_mutations.txt | 4 +-- public/pcpg_tcga/data_cna.txt | 4 +-- public/pcpg_tcga/data_linear_cna.txt | 4 +-- public/pcpg_tcga/data_methylation_hm450.txt | 4 +-- public/pcpg_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../pcpg_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../pcpg_tcga_pub/data_methylation_hm450.txt | 4 +-- .../pcpg_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- .../data_mrnaseq_rsem_raw_data.txt | 4 +-- public/pcpg_tcga_pub/data_mutations.txt | 2 +- public/pog570_bcgsc_2020/data_cna.txt | 4 +-- .../pog570_bcgsc_2020/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/pog570_bcgsc_2020/data_mutations.txt | 4 +-- public/pptc_2019/data_cna.txt | 4 +-- public/pptc_2019/data_mrna_seq_rpkm.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/prad_broad/data_cna.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/prad_broad/data_mutations.txt | 4 +-- public/prad_broad_2013/data_cna.txt | 4 +-- public/prad_broad_2013/data_log2_cna.txt | 4 +-- public/prad_broad_2013/data_mutations.txt | 4 +-- public/prad_cdk12_mskcc_2020/data_sv.txt | 4 +-- public/prad_eururol_2017/data_cna.txt | 4 +-- .../prad_eururol_2017/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_fpkm_zscores_ref_diploid_samples.txt | 4 +-- public/prad_eururol_2017/data_mutations.txt | 4 +-- public/prad_fhcrc/data_cna.txt | 4 +-- public/prad_fhcrc/data_log2_cna.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 2 +- public/prad_fhcrc/data_mutations.txt | 2 +- public/prad_mich/data_cna.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/prad_mich/data_mutations.txt | 4 +-- public/prad_msk_mdanderson_2023/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- public/prad_msk_stopsack_2021/data_sv.txt | 4 +-- public/prad_mskcc/data_cna.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 2 +- public/prad_mskcc/data_mrna_outliers.txt | 2 +- public/prad_mskcc_2014/data_cna.txt | 4 +-- .../data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/prad_organoids_msk_2022/data_cna.txt | 4 +-- .../data_mrna_seq_tpm.txt | 4 +-- ...a_mrna_seq_tpm_zscores_ref_all_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- public/prad_p1000/data_cna.txt | 4 +-- public/prad_p1000/data_mutations.txt | 2 +- public/prad_pik3r1_msk_2021/data_sv.txt | 4 +-- public/prad_su2c_2015/all_data_by_genes.txt | 26 +++++++++---------- .../all_thresholded.by_genes.txt | 26 +++++++++---------- .../data_RNA_Seq_expression_capture.txt | 4 +-- ...ata_RNA_Seq_expression_capture_Zscores.txt | 4 +-- ..._expression_capture_all_sample_Zscores.txt | 4 +-- public/prad_su2c_2015/data_cna.txt | 4 +-- public/prad_su2c_2015/data_log2_cna.txt | 4 +-- public/prad_su2c_2015/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/prad_su2c_2015/data_mutations.txt | 4 +-- public/prad_su2c_2019/data_cna.txt | 4 +-- .../data_mrna_seq_fpkm_capture.txt | 4 +-- ...q_fpkm_capture_zscores_ref_all_samples.txt | 4 +-- ...km_capture_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_seq_fpkm_polya.txt | 4 +-- ...seq_fpkm_polya_zscores_ref_all_samples.txt | 4 +-- ...fpkm_polya_zscores_ref_diploid_samples.txt | 4 +-- public/prad_su2c_2019/data_mutations.txt | 4 +-- public/prad_tcga/data_cna.txt | 4 +-- public/prad_tcga/data_linear_cna.txt | 4 +-- public/prad_tcga/data_methylation_hm450.txt | 4 +-- public/prad_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/prad_tcga/data_mutations.txt | 2 +- .../prad_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- public/prad_tcga_pub/data_cna.txt | 4 +-- public/prad_tcga_pub/data_linear_cna.txt | 4 +-- .../prad_tcga_pub/data_methylation_hm450.txt | 4 +-- .../prad_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/prad_tcga_pub/data_mutations.txt | 4 +-- .../prostate_dkfz_2018/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/prostate_dkfz_2018/data_mutations.txt | 4 +-- public/ptad_msk_2024/data_mutations.txt | 4 +-- .../data_mrna_seq_expression.txt | 4 +-- ...seq_expression_zscores_ref_all_samples.txt | 4 +-- public/rectal_msk_2022/data_mutations.txt | 2 +- .../rt_target_2018_pub/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/sarc_tcga/data_cna.txt | 4 +-- public/sarc_tcga/data_linear_cna.txt | 4 +-- public/sarc_tcga/data_methylation_hm450.txt | 4 +-- public/sarc_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/sarc_tcga/data_mutations.txt | 4 +-- .../sarc_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../sarc_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/sarc_tcga_pub/data_cna.txt | 4 +-- .../sarc_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/sarc_tcga_pub/data_mutations.txt | 2 +- public/sarcoma_msk_2022/data_sv.txt | 4 +-- .../data_mutations.txt | 4 +-- public/sclc_clcgp/data_mutations.txt | 4 +-- public/sclc_jhu/data_mutations.txt | 4 +-- public/sclc_jhu/data_sv.txt | 4 +-- .../sclc_ucologne_2015/data_mrna_seq_fpkm.txt | 4 +-- ..._mrna_seq_fpkm_zscores_ref_all_samples.txt | 4 +-- public/sclc_ucologne_2015/data_mutations.txt | 4 +-- public/skcm_broad/data_mutations.txt | 4 +-- .../data_mutations.txt | 4 +-- public/skcm_broad_dfarber/data_mutations.txt | 4 +-- public/skcm_dfci_2015/data_cna.txt | 4 +-- public/skcm_dfci_2015/data_mrna_seq_rpkm.txt | 2 +- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 2 +- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 2 +- public/skcm_dfci_2015/data_mutations.txt | 4 +-- public/skcm_mskcc_2014/data_cna.txt | 4 +-- public/skcm_mskcc_2014/data_mrna_seq_rpkm.txt | 2 +- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 2 +- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 2 +- public/skcm_tcga/data_cna.txt | 4 +-- public/skcm_tcga/data_linear_cna.txt | 4 +-- public/skcm_tcga/data_methylation_hm450.txt | 4 +-- public/skcm_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/skcm_tcga/data_mutations.txt | 4 +-- .../skcm_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- .../skcm_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/skcm_tcga_pub_2015/data_mutations.txt | 4 +-- public/stad_oncosg_2018/data_cna.txt | 2 +- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- public/stad_oncosg_2018/data_mutations.txt | 4 +-- .../stad_pfizer_uhongkong/data_mutations.txt | 4 +-- public/stad_tcga/data_cna.txt | 4 +-- public/stad_tcga/data_linear_cna.txt | 4 +-- public/stad_tcga/data_methylation_hm27.txt | 4 +-- public/stad_tcga/data_methylation_hm450.txt | 4 +-- public/stad_tcga/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- public/stad_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/stad_tcga/data_mutations.txt | 4 +-- .../stad_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- .../stad_tcga_pan_can_atlas_2018/data_sv.txt | 4 +-- public/stad_tcga_pub/data_cna.txt | 4 +-- public/stad_tcga_pub/data_linear_cna.txt | 4 +-- .../stad_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/stad_tcga_pub/data_mutations.txt | 4 +-- public/stad_uhongkong/data_mutations.txt | 4 +-- public/stad_utokyo/data_mutations.txt | 4 +-- public/stes_tcga_pub/data_cna.txt | 4 +-- public/stes_tcga_pub/data_mutations.txt | 4 +-- public/stmyec_wcm_2022/data_cna.txt | 4 +-- public/tet_nci_2014/data_mutations.txt | 4 +-- public/tgct_tcga/data_cna.txt | 4 +-- public/tgct_tcga/data_linear_cna.txt | 4 +-- public/tgct_tcga/data_methylation_hm450.txt | 4 +-- public/tgct_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/tgct_tcga/data_mutations.txt | 4 +-- .../tgct_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/thca_tcga/data_cna.txt | 4 +-- public/thca_tcga/data_methylation_hm450.txt | 4 +-- public/thca_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/thca_tcga/data_mutations.txt | 2 +- .../thca_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- public/thca_tcga_pub/data_cna.txt | 4 +-- public/thca_tcga_pub/data_linear_cna.txt | 4 +-- .../thca_tcga_pub/data_methylation_hm450.txt | 4 +-- .../thca_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/thca_tcga_pub/data_mutations.txt | 4 +-- public/thym_tcga/data_cna.txt | 4 +-- public/thym_tcga/data_linear_cna.txt | 4 +-- public/thym_tcga/data_methylation_hm450.txt | 4 +-- public/thym_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../thym_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/thyroid_gatci_2024/data_cna.txt | 4 +-- public/thyroid_gatci_2024/data_mutations.txt | 4 +-- public/ucec_cptac_2020/data_cna.txt | 4 +-- public/ucec_cptac_2020/data_log2cna.txt | 4 +-- .../ucec_cptac_2020/data_methylation_epic.txt | 2 +- public/ucec_cptac_2020/data_mrna_seq_rsem.txt | 4 +-- ..._mrna_seq_rsem_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/ucec_cptac_2020/data_mutations.txt | 4 +-- public/ucec_tcga/data_cna.txt | 4 +-- public/ucec_tcga/data_linear_cna.txt | 4 +-- public/ucec_tcga/data_methylation_hm450.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- public/ucec_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/ucec_tcga/data_mutations.txt | 4 +-- .../ucec_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- ...seq_v2_rsem_zscores_ref_normal_samples.txt | 4 +-- .../data_mutations.txt | 4 +-- public/ucec_tcga_pub/data_cna.txt | 4 +-- public/ucec_tcga_pub/data_linear_cna.txt | 4 +-- .../ucec_tcga_pub/data_methylation_hm27.txt | 4 +-- .../data_mrna_agilent_microarray.txt | 2 +- ...ent_microarray_zscores_ref_all_samples.txt | 2 +- ...microarray_zscores_ref_diploid_samples.txt | 2 +- .../ucec_tcga_pub/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/ucec_tcga_pub/data_mutations.txt | 4 +-- public/ucs_jhu_2014/data_mutations.txt | 4 +-- public/ucs_tcga/data_cna.txt | 4 +-- public/ucs_tcga/data_linear_cna.txt | 4 +-- public/ucs_tcga/data_methylation_hm450.txt | 4 +-- public/ucs_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/ucs_tcga/data_mutations.txt | 4 +-- .../ucs_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- public/uvm_tcga/data_cna.txt | 4 +-- public/uvm_tcga/data_linear_cna.txt | 4 +-- public/uvm_tcga/data_methylation_hm450.txt | 4 +-- public/uvm_tcga/data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- .../uvm_tcga_pan_can_atlas_2018/data_cna.txt | 4 +-- .../data_log2_cna.txt | 4 +-- .../data_mrna_seq_v2_rsem.txt | 4 +-- ...na_seq_v2_rsem_zscores_ref_all_samples.txt | 4 +-- ...eq_v2_rsem_zscores_ref_diploid_samples.txt | 4 +-- public/vsc_cuk_2018/data_mutations.txt | 4 +-- .../data_methylation_hm450.txt | 2 +- .../data_mrna_agilent_microarray.txt | 4 +-- ...ent_microarray_zscores_ref_all_samples.txt | 4 +-- ...microarray_zscores_ref_diploid_samples.txt | 4 +-- .../wt_target_2018_pub/data_mrna_seq_rpkm.txt | 4 +-- ..._mrna_seq_rpkm_zscores_ref_all_samples.txt | 4 +-- ...a_seq_rpkm_zscores_ref_diploid_samples.txt | 4 +-- 1014 files changed, 1971 insertions(+), 1953 deletions(-) rename public/coad_silu_2022/{ => genesets}/data_gsva_pvalues.txt (100%) rename public/coad_silu_2022/{ => genesets}/data_gsva_scores.txt (100%) rename public/coad_silu_2022/{ => genesets}/meta_gsva_pvalues.txt (100%) rename public/coad_silu_2022/{ => genesets}/meta_gsva_scores.txt (100%) create mode 100644 public/nst_nfosi_ntap/README.md create mode 100644 public/nst_nfosi_ntap/data_mrna_seq_tpm.txt create mode 100644 public/nst_nfosi_ntap/meta_mrna_seq_tpm.txt diff --git a/public/acbc_mskcc_2015/data_cna.txt b/public/acbc_mskcc_2015/data_cna.txt index b028d34d22..6b05ba0f7c 100644 --- a/public/acbc_mskcc_2015/data_cna.txt +++ b/public/acbc_mskcc_2015/data_cna.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:97d1c4c1760c1ec21f4de06446ccc396de11f22903e171ebdf20d91d1798c0e1 -size 70579 +oid sha256:e283372725fa253f88ea629d97acc2288422ff30142ed07ce0b246085ee96dc2 +size 70578 diff --git a/public/acc_2019/data_cna.txt 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b/public/nst_nfosi_ntap/README.md @@ -0,0 +1,7 @@ +## Notes + +The patient cohort is from [The Johns Hopkins NF1 Biospecimen Repository](https://www.synapse.org/Synapse:syn53140231), which is an active biobanking project with rolling releases. It is funded by the [Neurofibromatosis Therapeutic Acceleration Program (NTAP)](https://www.n-tap.org/), led by Christine Pratilas, M.D., and David Loeb, M.D., Ph.D., with contributions from Angela Hirbe, PhD., and additional collaboration, data processing and data management by [NF-OSI / Sage Bionetworks](https://help.nf.synapse.org/NFdocs/about). + +Patient raw sequencing data are generated by the institutional cores and shared on the secure Synapse platform with access restrictions. Sage Bionetworks does additional processing through the funded initiative described here: https://help.nf.synapse.org/NFdocs/data-processing. The [nf-core/rnaseq](https://nf-co.re/rnaseq/) workflow is used for gene expression from bulk RNA-seq and [nf-co.re/sarek](https://nf-co.re/sarek/) is used for somatic variant calling from whole exome sequencing (also for germline variant calling, but this is not shared on cBioPortal and only available on Synapse with access restrictons). After variant calling, variant annotation is done with [vcf2maf](https://github.com/Sage-Bionetworks-Workflows/nf-vcf2maf). + +Sage Bionetworks then appropriately packages the processed gene expression and mutations data with approved clinical data for contribution to cBioPortal, also funded by NTAP. Full clinical data are not contributed due to IRB restrictions. Released patient samples are confirmed with Christine Pratilas through an internal process. Updates may be occasionally made. For questions about clinical data and collaboration, please use the most up-to-date PI contact instructions on the [project space](https://www.synapse.org/Synapse:syn53133024/). diff --git a/public/nst_nfosi_ntap/case_lists/cases_all.txt b/public/nst_nfosi_ntap/case_lists/cases_all.txt index 363a1d2410..8b73f068f7 100644 --- a/public/nst_nfosi_ntap/case_lists/cases_all.txt +++ b/public/nst_nfosi_ntap/case_lists/cases_all.txt @@ -1,6 +1,6 @@ cancer_study_identifier: nst_nfosi_ntap stable_id: nst_nfosi_ntap_all case_list_name: All samples -case_list_description: All samples (19 samples) +case_list_description: All samples (134 samples) case_list_category: all_cases_in_study -case_list_ids: 2-010_Neurofibroma 2-026_Neurofibroma 2-013_Plexiform_Neurofibroma 2-004_Plexiform_Neurofibroma 2-012_Neurofibroma 2-031_Cell_Line 2-017_Neurofibroma 2-021_Neurofibroma 2-019_Neurofibroma 2-029_Neurofibroma 2-023_Plexiform_Neurofibroma 2-014_Neurofibroma 2-001_Plexiform_Neurofibroma 2-006_Plexiform_Neurofibroma 2-032_Plexiform_Neurofibroma 2-015_Plexiform_Neurofibroma 2-031_Malignant_Peripheral_Nerve_Sheath_Tumor 2-016_Neurofibroma 2-015_Neurofibroma +case_list_ids: JH-2-075-3HE68-A JH-2-082-G8357-A JH-2-007-B14BB-AG2A6 JH-2-054-241HF-A JH-2-002-GAF53-A1011 JH-2-085-F2983-F783D JH-2-068-2BHHG-5F9FC JH-2-111-G645D-6C5FF JH-2-009-518B9-A JH-2-016-6H516-A JH-2-010-H915D-A JH-2-017-9FH8F-A JH-2-077-4H749-8GCFH JH-2-014-AH466-96B78 JH-2-055-9F5F3-6G883 JH-2-068-A733G-A JH-2-023-91HBD-A JH-2-001-8A1B1-7B15A JH-2-093-518GA-A JH-2-100-19H33-94G2C JH-2-003-H3G1H-HC8GG JH-2-091-CAA8H-A JH-2-021-6GFE7-A JH-2-068-FH52C-A JH-2-009-2578C-A JH-2-079-CB92G-A JH-2-021-6GFE7-7HBG6 JH-2-002-94FAA-A JH-2-001-8A1B1-A JH-2-095-4H3FE-A JH-2-060-4CE8D-A JH-2-076-41G1H-A JH-2-079-9D31F-A JH-2-006-D6BA4-BAEBD JH-2-092-B52E5-A JH-2-045-GH3AA-A JH-2-045-F7H3C-A JH-2-032-AE88A-A JH-2-031-9GEA9-A JH-2-055-1419H-9GG15 JH-2-002-GAF53-FB9H7 JH-2-029-7AE7F-GC2A3 JH-2-002-GAF53-A71AA 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JH-2-013-7886G-AA816 JH-2-094-5HA24-CC3H4 JH-2-060-99B2D-GG71G JH-2-044-83F15-GA258 JH-2-015-G41AC-A JH-2-086-5EA11-494GE JH-2-023-89E1F-A JH-2-016-6H516-818HB JH-2-111-G645D-A JH-2-010-H915D-BB99B JH-2-076-41G1H-7FGE5 JH-2-026-9FD64-A JH-2-093-214AE-H5A8H JH-2-002-GAF53-3BAGC JH-2-082-G8357-EG55A JH-2-015-6AD96-A JH-2-031-BFF3F-DG6C8 JH-2-014-AH466-A JH-2-076-811H2-A JH-2-015-55B8D-A JH-2-068-2BHHG-A JH-2-061-1H66H-AB35D JH-2-090-19D3F-G36F6 JH-2-012-HE58H-37B26 JH-2-026-9FD64-HF616 JH-2-082-B5148-A JH-2-006-D6BA4-A JH-2-107-AGD39-1CH62 JH-2-075-3HE68-C61FE JH-2-023-9DA42-A JH-2-092-B52E5-BFCBA JH-2-004-9D9D7-A JH-2-090-59DE8-A JH-2-077-88G11-A JH-2-113-7857D-A JH-2-102-3B72A-A JH-2-023-1G2BC-82G48 JH-2-061-1H66H-A diff --git a/public/nst_nfosi_ntap/case_lists/cases_sequenced.txt b/public/nst_nfosi_ntap/case_lists/cases_sequenced.txt index 3c6255a2c0..203a74f844 100644 --- a/public/nst_nfosi_ntap/case_lists/cases_sequenced.txt +++ b/public/nst_nfosi_ntap/case_lists/cases_sequenced.txt @@ -1,6 +1,6 @@ cancer_study_identifier: nst_nfosi_ntap stable_id: nst_nfosi_ntap_sequenced case_list_name: Samples with mutation data -case_list_description: Samples with mutation data (19 samples) +case_list_description: Samples with mutation data (80 samples) case_list_category: all_cases_with_mutation_data -case_list_ids: 2-010_Neurofibroma 2-026_Neurofibroma 2-013_Plexiform_Neurofibroma 2-014_Neurofibroma 2-001_Plexiform_Neurofibroma 2-006_Plexiform_Neurofibroma 2-004_Plexiform_Neurofibroma 2-032_Plexiform_Neurofibroma 2-015_Plexiform_Neurofibroma 2-016_Neurofibroma 2-012_Neurofibroma 2-031_Malignant_Peripheral_Nerve_Sheath_Tumor 2-031_Cell_Line 2-017_Neurofibroma 2-015_Neurofibroma 2-021_Neurofibroma 2-019_Neurofibroma 2-029_Neurofibroma 2-023_Plexiform_Neurofibroma +case_list_ids: JH-2-100-19H33-A JH-2-075-3HE68-A JH-2-082-G8357-A JH-2-113-7857D-A JH-2-015-C436G-A JH-2-054-241HF-A JH-2-002-GAF53-A1011 JH-2-001-8A1B1-A JH-2-009-2578C-A JH-2-057-37D5D-A JH-2-060-19EC4-A JH-2-016-6H516-A JH-2-023-1G2BC-A JH-2-017-9FH8F-A JH-2-068-A733G-A JH-2-023-91HBD-A JH-2-093-214AE-A JH-2-103-H731E-A JH-2-023-876HC-A JH-2-085-F2983-A JH-2-093-518GA-A JH-2-086-5EA11-A JH-2-055-E1381-A JH-2-054-9255F-A JH-2-089-H8EBA-A JH-2-021-6GFE7-A JH-2-068-FH52C-A JH-2-002-354A1-A JH-2-079-CB92G-A JH-2-009-518B9-A JH-2-002-94FAA-A JH-2-045-F7H3C-A JH-2-095-4H3FE-A JH-2-060-4CE8D-A JH-2-076-41G1H-A JH-2-079-9D31F-A JH-2-092-B52E5-A JH-2-045-GH3AA-A JH-2-074-HE12C-A JH-2-032-AE88A-A JH-2-031-9GEA9-A JH-2-023-89E1F-A JH-2-055-1419H-9GG15 JH-2-099-26HCE-A JH-2-002-GAF53-FB9H7 JH-2-111-G645D-A JH-2-012-HE58H-A JH-2-013-7886G-A JH-2-026-9FD64-A JH-2-029-7AE7F-A JH-2-015-6AD96-A JH-2-094-5HA24-A JH-2-016-4H597-A JH-2-014-AH466-A JH-2-076-811H2-A JH-2-015-55B8D-A JH-2-010-H915D-A JH-2-094-151G9-A JH-2-044-83F15-A JH-2-096-5E593-A JH-2-006-D6BA4-A JH-2-104-51E2H-A JH-2-019-DB5EH-A JH-2-023-9DA42-A JH-2-075-4F211-A JH-2-082-B5148-A JH-2-055-FC9GH-A JH-2-090-19D3F-A JH-2-004-9D9D7-A JH-2-090-59DE8-A JH-2-077-88G11-A JH-2-015-G41AC-A JH-2-102-3B72A-A JH-2-002-FF824-A JH-2-092-B4F11-A JH-2-068-A7488-A JH-2-068-2BHHG-A JH-2-091-CAA8H-A JH-2-072-3DD4G-A JH-2-061-1H66H-A diff --git a/public/nst_nfosi_ntap/data_clinical_patient.txt b/public/nst_nfosi_ntap/data_clinical_patient.txt index 5d27629cd6..09a79a9d9c 100644 --- a/public/nst_nfosi_ntap/data_clinical_patient.txt +++ b/public/nst_nfosi_ntap/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:cc8416ea6960a03a44d585469037f25ae65358d273efa9f1d805228a774f85ef -size 621 +oid sha256:d8b2fca82dd59fa1a7a96ac58bbb0fd6c1c5752b83e30ec9733b5d81f108a3c9 +size 881 diff --git a/public/nst_nfosi_ntap/data_clinical_sample.txt b/public/nst_nfosi_ntap/data_clinical_sample.txt index aada593fc2..67604d4854 100644 --- a/public/nst_nfosi_ntap/data_clinical_sample.txt +++ b/public/nst_nfosi_ntap/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid 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27602051 diff --git a/public/nst_nfosi_ntap/meta_mrna_seq_tpm.txt b/public/nst_nfosi_ntap/meta_mrna_seq_tpm.txt new file mode 100644 index 0000000000..09b0be0d36 --- /dev/null +++ b/public/nst_nfosi_ntap/meta_mrna_seq_tpm.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: nst_nfosi_ntap +genetic_alteration_type: MRNA_EXPRESSION +datatype: CONTINUOUS +stable_id: mrna_seq_tpm +show_profile_in_analysis_tab: true +profile_name: Normalized gene expression +profile_description: Normalized gene expression levels (TPM) +data_filename: data_mrna_seq_tpm.txt diff --git a/public/nst_nfosi_ntap/meta_study.txt b/public/nst_nfosi_ntap/meta_study.txt index 435b6ae83b..7097f7e5aa 100644 --- a/public/nst_nfosi_ntap/meta_study.txt +++ b/public/nst_nfosi_ntap/meta_study.txt @@ -1,7 +1,7 @@ cancer_study_identifier: nst_nfosi_ntap type_of_cancer: nst -name: Nerve Sheath Tumors (Johns Hopkins, Sci Data 2020) -description: Whole-exome sequencing of 18 patients with matched nerve sheath tumor-normal samples. The raw data is contributed by Johns Hopkins University researchers (Pollard et al. Sci Data 2020) funded by the Neurofibromatosis Therapeutic Acceleration Program (NTAP). The reprocessing of the raw data is managed by the NF Open Science Initiative (NF Data Portal). The original raw data was reprocessed with updated genome build and filtered to remove low confidence variant calls, and any common variants that had a gnomAD allele frequency (for any subpopulation) greater than or equal to 0.0005. +name: Nerve Sheath Tumors (Johns Hopkins, 2024) +description: Whole-exome sequencing of 134 nerve sheath tumor samples with their matched normals. The raw data is contributed by Johns Hopkins University researchers funded by the Neurofibromatosis Therapeutic Acceleration Program (NTAP). The reprocessing of the raw data is managed by the NF Open Science Initiative (NF Data Portal). The original raw data was reprocessed with updated genome build and filtered to remove low confidence variant calls, and any common variants that had a gnomAD allele frequency (for any subpopulation) greater than or equal to 0.0005. (Recent preprint can be found here). citation: Pollard et al. Sci Data 2020 pmid: 32561749 reference_genome: hg38 diff --git a/public/ov_tcga/data_cna.txt b/public/ov_tcga/data_cna.txt index 09f248cbb4..f4a9e35ec3 100644 --- a/public/ov_tcga/data_cna.txt +++ b/public/ov_tcga/data_cna.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:322b7177e40e299caf9d93a2d64dfd3d34af72734ef912949a9a07dc824b06a5 -size 34156957 +oid sha256:410cbf4d17f8d70ec1623388cfb7f7e357b6d826dd34c4acd0941a41955f9288 +size 34156958 diff --git a/public/ov_tcga/data_linear_cna.txt b/public/ov_tcga/data_linear_cna.txt index 199fb8b84b..e8726b62ee 100644 --- a/public/ov_tcga/data_linear_cna.txt +++ b/public/ov_tcga/data_linear_cna.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:1676a394c3c8e5572ae5204ed190d236b8fda77dfb999f9653b1c9eabd362c89 -size 93533750 +oid sha256:2571bf0f8ad2f57bb63db856fc3ba544dcde384ed04ee4f286f7bc6594da03fa +size 93533751 diff --git a/public/ov_tcga/data_methylation_hm27.txt 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-0.506 -0.086 0.029 -0.650 0.246 0.101 -0.012 -0.301 -0.156 0.008 -0.419 -0.016 -0.361 -0.001 0.000 0.002 -0.036 -0.039 -0.429 -0.054 0.041 -0.291 -0.129 -0.028 -0.292 -0.559 -0.112 0.552 -0.121 -0.116 0.025 0.451 -0.317 0.651 -0.441 0.062 -0.202 -0.027 -0.467 -0.522 -0.048 0.516 -0.014 -MST1P9 11223 1p36.13 -0.419 0.471 -0.012 -0.007 -0.360 -0.336 -0.005 -0.020 -0.012 0.015 -0.443 0.011 -0.007 -0.330 -0.154 0.008 -0.004 -0.018 -0.140 0.048 -0.010 0.005 -0.259 -0.015 -0.325 -0.085 0.253 -0.021 -0.048 -0.258 0.056 -0.043 0.365 -0.022 -0.093 0.054 -0.433 0.111 0.468 -0.029 -0.056 -0.133 0.068 -0.421 0.038 -0.236 -0.061 -0.106 -0.392 -0.560 -0.018 -0.528 -0.013 -0.931 0.034 -0.009 -0.195 -0.258 -0.151 0.039 -0.057 -0.274 0.007 -0.033 0.391 -0.000 -0.269 0.088 -0.047 0.014 -0.017 -0.552 -0.320 -0.009 0.014 -0.020 -0.007 0.094 -0.023 -0.479 -0.333 -0.221 -0.496 -0.232 -0.287 -0.291 0.087 0.013 -0.500 -0.005 -1.352 -0.042 0.034 -0.281 0.023 -0.613 -0.275 0.087 0.071 -0.164 -0.230 -0.019 0.049 -0.294 -0.251 0.015 -0.728 -0.506 -0.086 0.029 -0.650 0.246 0.101 -0.012 -0.301 -0.156 0.008 -0.419 -0.016 -0.361 -0.001 0.000 0.002 -0.036 -0.039 -0.429 -0.054 0.041 -0.291 -0.129 -0.028 -0.292 -0.559 -0.112 0.552 -0.121 -0.116 0.025 0.451 -0.317 0.651 -0.441 0.062 -0.202 -0.027 -0.467 -0.522 -0.048 0.516 -0.014 +MST1L 11223 1p36.13 -0.419 0.471 -0.012 -0.007 -0.360 -0.336 -0.005 -0.020 -0.012 0.015 -0.443 0.011 -0.007 -0.330 -0.154 0.008 -0.004 -0.018 -0.140 0.048 -0.010 0.005 -0.259 -0.015 -0.325 -0.085 0.253 -0.021 -0.048 -0.258 0.056 -0.043 0.365 -0.022 -0.093 0.054 -0.433 0.111 0.468 -0.029 -0.056 -0.133 0.068 -0.421 0.038 -0.236 -0.061 -0.106 -0.392 -0.560 -0.018 -0.528 -0.013 -0.931 0.034 -0.009 -0.195 -0.258 -0.151 0.039 -0.057 -0.274 0.007 -0.033 0.391 -0.000 -0.269 0.088 -0.047 0.014 -0.017 -0.552 -0.320 -0.009 0.014 -0.020 -0.007 0.094 -0.023 -0.479 -0.333 -0.221 -0.496 -0.232 -0.287 -0.291 0.087 0.013 -0.500 -0.005 -1.352 -0.042 0.034 -0.281 0.023 -0.613 -0.275 0.087 0.071 -0.164 -0.230 -0.019 0.049 -0.294 -0.251 0.015 -0.728 -0.506 -0.086 0.029 -0.650 0.246 0.101 -0.012 -0.301 -0.156 0.008 -0.419 -0.016 -0.361 -0.001 0.000 0.002 -0.036 -0.039 -0.429 -0.054 0.041 -0.291 -0.129 -0.028 -0.292 -0.559 -0.112 0.552 -0.121 -0.116 0.025 0.451 -0.317 0.651 -0.441 0.062 -0.202 -0.027 -0.467 -0.522 -0.048 0.516 -0.014 NBPF1 55672 1p36.13 -0.419 0.471 -0.012 -0.007 -0.360 -0.336 -0.005 -0.020 -0.012 0.015 -0.443 0.011 -0.007 -0.330 -0.154 0.008 -0.004 -0.018 -0.140 0.048 -0.010 0.005 -0.259 -0.015 -0.325 -0.085 0.253 -0.021 -0.048 -0.258 0.056 -0.043 0.365 -0.022 -0.093 0.054 -0.433 0.111 0.468 -0.029 -0.056 -0.133 0.068 -0.421 0.038 -0.236 -0.061 -0.106 -0.392 -0.560 -0.018 -0.528 -0.013 -0.931 0.034 -0.009 -0.195 -0.258 -0.151 0.039 -0.057 -0.274 0.007 -0.033 0.391 -0.000 -0.269 0.088 -0.047 0.014 -0.017 -0.552 -0.320 -0.009 0.014 -0.020 -0.007 0.094 -0.023 -0.479 -0.333 -0.221 -0.496 -0.232 -0.287 -0.291 0.087 0.013 -0.500 -0.005 -1.352 -0.042 0.034 -0.281 0.023 -0.613 -0.275 0.087 0.071 -0.164 -0.230 -0.019 0.049 -0.294 -0.251 0.015 -0.728 -0.506 -0.086 0.029 -0.650 0.246 0.101 -0.012 -0.301 -0.156 0.008 -0.419 -0.016 -0.361 -0.001 0.000 0.002 -0.036 -0.039 -0.429 -0.054 0.041 -0.291 -0.129 -0.028 -0.292 -0.559 -0.112 0.552 -0.121 -0.116 0.025 0.451 -0.317 0.651 -0.441 0.062 -0.202 -0.027 -0.467 -0.522 -0.048 0.516 -0.014 SDHB 6390 1p36.13 -0.495 0.386 -0.012 0.005 -0.360 -0.349 -0.008 -0.011 -0.012 -0.010 -0.413 0.011 0.012 -0.331 -0.142 0.008 -0.010 -0.015 -0.140 0.050 -0.009 0.005 -0.234 -0.033 -0.316 -0.074 0.263 -0.021 -0.024 -0.451 0.056 -0.039 0.376 -0.001 -0.090 0.054 -0.433 0.096 0.026 -0.030 -0.036 -0.028 0.060 -0.421 0.038 -0.228 0.006 -0.027 -0.406 -0.556 -0.051 -0.528 -0.013 -0.931 0.017 -0.088 -0.208 -0.257 -0.152 0.030 -0.070 -0.274 0.018 0.019 0.391 -0.000 -0.249 0.078 -0.057 0.013 -0.026 -0.522 -0.521 -0.000 0.010 -0.016 -0.027 0.078 -0.016 -0.473 -0.336 -0.203 -0.490 -0.232 -0.299 -0.291 0.100 0.002 -0.500 -0.005 -1.357 -0.042 0.034 -0.286 0.005 -0.611 -0.358 0.062 0.071 -0.187 -0.230 -0.019 0.027 -0.261 -0.268 0.015 -0.722 -0.513 -0.070 0.016 -0.652 0.255 0.097 -0.008 -0.313 -0.158 -0.123 -0.419 -0.016 -0.368 0.000 0.000 0.013 -0.037 -0.031 -0.431 -0.021 0.026 -0.279 -0.134 -0.011 -0.289 -0.546 -0.100 0.572 -0.111 -0.117 0.024 0.451 -0.316 0.679 -0.444 0.062 -0.210 -0.020 -0.472 -0.535 -0.045 0.324 -0.015 PADI2 11240 1p36.13 -0.495 0.386 -0.012 0.005 -0.360 -0.349 -0.008 -0.011 -0.012 -0.010 -0.413 0.011 0.012 -0.331 -0.142 0.008 -0.010 -0.015 -0.140 0.050 -0.009 0.005 -0.234 -0.033 -0.316 -0.074 0.263 -0.021 -0.024 -0.451 0.056 -0.039 0.376 -0.001 -0.090 0.054 -0.433 0.096 0.026 -0.030 -0.036 0.046 0.060 -0.421 0.038 -0.228 0.006 -0.027 -0.406 -0.556 -0.051 -0.528 -0.013 -0.931 0.017 -0.088 -0.208 -0.257 -0.152 0.030 -0.070 -0.274 0.018 0.019 0.391 -0.000 -0.249 0.078 -0.057 0.013 -0.026 -0.522 -0.521 -0.000 0.010 -0.016 -0.027 0.078 -0.016 -0.473 -0.336 -0.203 -0.490 -0.232 -0.299 -0.291 0.100 0.002 -0.500 -0.005 -1.357 -0.042 0.034 -0.286 0.005 -0.611 -0.358 0.062 0.071 -0.187 -0.230 -0.019 0.027 -0.261 -0.268 0.015 -0.722 -0.513 -0.070 0.016 -0.652 0.255 0.097 -0.008 -0.313 -0.158 0.092 -0.419 -0.016 -0.368 0.000 0.000 0.013 -0.037 -0.031 -0.431 -0.021 0.026 -0.279 -0.134 -0.011 -0.289 -0.546 -0.100 0.572 -0.111 -0.117 0.024 0.451 -0.316 0.679 -0.444 0.062 -0.210 -0.020 -0.472 -0.535 -0.045 0.324 -0.015 @@ -4168,7 +4168,7 @@ SNORA6 574040 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0. SNORA62 6044 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0.006 0.128 -0.210 -0.018 0.067 0.388 -0.000 -0.950 0.764 -0.003 -0.001 0.014 -0.022 -0.011 0.024 0.087 0.276 0.012 0.019 0.493 0.343 -0.587 -0.019 0.377 -0.064 -0.105 0.918 -0.419 0.198 0.004 0.563 0.016 0.770 0.876 0.881 0.017 0.388 0.004 0.009 0.053 -0.194 0.628 0.562 0.004 0.001 -0.020 0.129 0.303 0.188 0.426 -0.023 -0.430 0.038 0.017 0.552 -0.013 0.005 0.071 0.082 0.054 0.203 0.023 -0.006 0.024 -0.006 -0.069 0.307 0.608 0.067 -0.012 0.838 -0.389 -0.168 0.338 0.239 -0.311 0.660 -0.002 -0.004 0.505 0.002 -0.427 0.025 0.709 0.011 0.220 0.584 -0.008 -0.145 -0.015 0.242 -0.002 0.141 0.041 -0.465 0.135 -0.017 -0.028 0.253 -0.020 -0.004 0.286 -0.031 -0.676 -0.013 0.382 0.462 -0.011 -0.251 0.218 0.131 0.052 -0.004 0.045 -0.009 -0.022 0.005 -0.008 0.243 -0.112 0.074 3.274 -0.002 0.308 1.347 0.548 0.034 0.540 0.023 0.414 0.026 -0.336 0.002 -0.009 0.049 0.006 -0.003 -0.035 0.032 0.056 0.003 MOBP 4336 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0.006 0.015 -0.210 -0.018 0.067 0.388 -0.000 -0.950 0.764 -0.003 -0.001 0.014 -0.022 -0.011 0.024 0.087 0.276 0.012 0.019 0.493 0.343 -0.587 -0.019 0.377 -0.064 -0.105 0.918 -0.419 0.198 0.004 0.563 0.016 0.770 0.876 0.764 0.017 0.388 0.004 0.009 0.053 -0.194 0.628 0.562 0.004 0.001 -0.020 0.055 0.303 0.188 0.426 -0.023 -0.430 0.038 0.017 0.552 -0.013 0.005 0.071 0.082 0.054 0.203 0.023 -0.006 0.024 -0.006 -0.069 0.307 0.608 0.067 -0.012 0.838 -0.389 -0.168 0.338 0.239 -0.311 0.660 -0.002 -0.004 0.505 0.002 -0.427 0.025 0.709 0.011 0.220 0.172 -0.008 -0.145 -0.015 0.242 -0.002 0.141 0.041 -0.465 0.135 -0.017 -0.028 0.253 -0.020 -0.004 0.286 -0.031 -0.676 -0.013 0.382 0.462 -0.011 -0.251 0.218 0.131 0.052 -0.004 0.045 -0.009 -0.022 0.005 -0.008 0.033 -0.112 0.074 3.100 -0.002 0.308 1.347 0.548 0.034 0.540 0.023 0.414 0.026 -0.336 0.002 -0.009 0.049 0.006 -0.003 -0.035 0.032 0.056 0.003 MYRIP 25924 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0.006 0.015 -0.210 -0.018 0.067 0.388 -0.000 -0.950 0.764 -0.003 -0.001 0.014 -0.022 -0.011 0.024 0.087 0.276 0.012 0.019 0.493 0.343 -0.587 -0.019 0.377 -0.064 -0.105 0.933 -0.419 0.198 0.004 0.563 0.016 0.805 0.876 0.545 0.017 0.388 0.004 0.009 0.053 -0.194 0.628 0.562 0.004 0.001 -0.020 0.018 0.303 0.188 0.426 -0.023 -0.430 0.038 0.017 0.552 -0.013 0.005 0.071 0.082 0.054 0.203 0.023 -0.006 0.024 -0.006 -0.069 0.307 0.608 0.067 -0.012 0.730 -0.389 -0.168 0.338 0.239 -0.311 0.660 -0.002 -0.004 0.505 0.002 -0.427 0.025 0.709 0.011 0.220 -0.034 -0.008 -0.145 -0.015 0.242 -0.126 0.141 0.041 -0.465 0.135 -0.017 -0.028 0.253 -0.020 -0.004 0.286 -0.031 -0.676 -0.013 0.382 0.462 -0.011 -0.251 0.218 0.131 0.052 -0.004 0.045 -0.009 -0.022 0.005 -0.008 0.033 -0.112 0.172 2.773 -0.002 0.308 1.347 0.548 0.034 0.623 0.023 0.414 0.026 -0.336 0.002 0.038 0.049 0.006 -0.003 -0.035 0.032 0.056 0.003 -FLJ33065 440952 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0.006 0.015 -0.210 -0.018 0.067 0.388 -0.000 -0.950 0.764 -0.003 -0.001 0.014 -0.022 -0.011 0.024 0.087 0.276 0.012 0.019 0.493 0.343 -0.587 -0.019 0.377 -0.064 -0.105 0.940 -0.419 0.198 0.004 0.563 0.016 0.823 0.876 0.530 0.017 0.388 0.004 0.009 0.053 -0.194 0.628 0.562 0.004 0.001 -0.020 0.018 0.303 0.188 0.426 -0.023 -0.430 0.038 0.017 0.552 -0.013 0.005 0.071 0.082 0.054 0.203 0.023 -0.006 0.024 -0.006 -0.069 0.307 0.608 0.067 -0.012 0.714 -0.389 -0.168 0.338 0.239 -0.311 0.660 -0.002 -0.004 0.505 0.002 -0.427 0.025 0.709 0.011 0.220 -0.034 -0.008 -0.145 -0.015 0.242 -0.118 0.141 0.041 -0.465 0.135 -0.017 -0.028 0.253 -0.020 -0.004 0.286 -0.031 -0.676 -0.013 0.382 0.462 -0.011 -0.251 0.218 0.131 0.052 -0.004 0.045 -0.009 -0.022 0.005 -0.008 0.033 -0.112 0.192 2.752 -0.002 0.308 1.347 0.548 0.034 0.664 0.023 0.414 0.026 -0.336 0.002 0.045 0.049 0.006 -0.003 -0.035 0.032 0.056 0.003 +ENTPD3-AS1 285266 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0.006 0.015 -0.210 -0.018 0.067 0.388 -0.000 -0.950 0.764 -0.003 -0.001 0.014 -0.022 -0.011 0.024 0.087 0.276 0.012 0.019 0.493 0.343 -0.587 -0.019 0.377 -0.064 -0.105 0.940 -0.419 0.198 0.004 0.563 0.016 0.823 0.876 0.530 0.017 0.388 0.004 0.009 0.053 -0.194 0.628 0.562 0.004 0.001 -0.020 0.018 0.303 0.188 0.426 -0.023 -0.430 0.038 0.017 0.552 -0.013 0.005 0.071 0.082 0.054 0.203 0.023 -0.006 0.024 -0.006 -0.069 0.307 0.608 0.067 -0.012 0.714 -0.389 -0.168 0.338 0.239 -0.311 0.660 -0.002 -0.004 0.505 0.002 -0.427 0.025 0.709 0.011 0.220 -0.034 -0.008 -0.145 -0.015 0.242 -0.118 0.141 0.041 -0.465 0.135 -0.017 -0.028 0.253 -0.020 -0.004 0.286 -0.031 -0.676 -0.013 0.382 0.462 -0.011 -0.251 0.218 0.131 0.052 -0.004 0.045 -0.009 -0.022 0.005 -0.008 0.033 -0.112 0.192 2.752 -0.002 0.308 1.347 0.548 0.034 0.664 0.023 0.414 0.026 -0.336 0.002 0.045 0.049 0.006 -0.003 -0.035 0.032 0.056 0.003 EIF1B 10289 3p22.1 0.503 0.288 -0.033 0.505 0.175 -0.030 0.017 0.014 0.011 -0.006 0.015 -0.210 -0.018 0.067 0.388 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-0.653 -1.145 -0.858 -0.337 -0.469 -0.526 -0.372 -0.892 -0.771 -0.241 -0.733 -0.465 -0.653 -0.543 -0.844 -1.234 -0.001 1.249 -0.652 -0.906 -0.997 -0.518 -0.450 -0.750 -0.422 -0.562 -0.512 -0.497 -0.344 -0.362 -1.026 +TNFRSF10B-AS1 286059 8p21.3 -0.887 -0.561 -0.678 -1.014 -0.796 -0.383 -0.701 -0.358 -0.353 -0.024 -0.851 -0.814 -0.444 -0.632 -0.684 -0.000 -0.842 -0.030 -0.362 -0.883 -0.688 -0.865 -0.221 -0.561 -0.668 -0.433 -0.782 -0.196 -0.556 -0.877 -0.688 -0.931 -0.780 -0.854 -0.289 -0.866 -1.299 -0.648 0.000 -0.607 -0.757 -0.890 -0.677 0.052 -0.533 -1.109 0.003 -0.023 -0.834 -0.827 0.216 -0.125 -0.824 -0.957 -0.784 -0.351 -1.002 -0.689 -0.948 -0.964 -1.128 -0.632 -0.421 -1.259 -0.957 -0.685 -0.453 -0.799 -0.342 -0.192 0.018 -1.190 -0.936 -0.538 -0.164 -0.603 1.029 -0.191 -0.425 -0.887 -0.828 -0.520 -0.518 -0.724 -1.124 -0.528 -0.020 -0.978 -0.967 -0.656 -0.930 -0.238 -1.146 -0.911 -0.008 -0.630 -0.685 -0.707 -0.614 -0.227 -0.343 -0.521 -0.789 -0.967 -0.892 -0.466 -0.729 -1.032 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-0.614 -0.227 -0.343 -0.521 -0.789 -0.967 -0.892 -0.466 -0.729 -1.032 -1.174 -0.437 -0.807 -1.091 -1.078 -0.634 -0.305 -0.934 -0.165 -0.723 -0.454 -0.653 -1.145 -0.858 -0.337 -0.469 -0.526 -0.372 -0.892 -0.771 -0.241 -0.733 -0.465 -0.653 -0.543 -0.844 -1.234 -0.001 1.249 -0.652 -0.906 -0.997 -0.518 -0.450 -0.750 -0.422 -0.562 -0.512 -0.497 -0.344 -0.362 -1.026 TNFRSF10C 8794 8p21.3 -0.887 -0.561 -0.678 -1.014 -0.796 -0.383 -0.701 -0.358 -0.353 -0.024 -0.851 -0.814 -0.444 -0.632 -0.684 -0.000 -0.842 -0.030 -0.362 -0.883 -0.688 -0.865 -0.221 -0.561 -0.668 -0.433 -0.782 -0.196 -0.556 -0.877 -0.688 -0.931 -0.780 -0.854 -0.289 -0.866 -1.299 -0.648 0.000 -0.607 -0.757 -0.890 -0.677 0.052 -0.533 -1.109 0.003 -0.023 -0.834 -0.827 0.216 -0.125 -0.824 -0.957 -0.784 -0.351 -1.002 -0.689 -0.948 -0.964 -1.128 -0.632 -0.421 -1.259 -0.957 -0.685 -0.453 -0.799 -0.342 -0.192 0.018 -1.190 -0.936 -0.538 -0.164 -0.603 1.029 -0.191 -0.425 -0.887 -0.828 -0.520 -0.518 -0.724 -1.124 -0.528 -0.020 -0.978 -0.967 -0.656 -0.930 -0.238 -1.146 -0.911 -0.008 -0.630 -0.685 -0.707 -0.614 -0.227 -0.343 -0.521 -0.789 -0.967 -0.892 -0.466 -0.729 -1.032 -1.174 -0.437 -0.807 -1.091 -1.078 -0.634 -0.305 -0.934 -0.183 -0.723 -0.454 -0.653 -1.145 -0.858 -0.337 -0.469 -0.526 -0.372 -0.892 -0.771 -0.241 -0.733 -0.465 -0.653 -0.543 -0.844 -1.234 -0.001 1.249 -0.652 -0.906 -0.997 -0.518 -0.450 -0.750 -0.422 -0.562 -0.512 -0.497 -0.344 -0.362 -1.026 TNFRSF10D 8793 8p21.3 -0.887 -0.561 -0.678 -1.014 -0.796 -0.383 -0.701 -0.358 -0.353 -0.024 -0.851 -0.814 -0.444 -0.632 -0.684 -0.000 -0.842 -0.030 -0.362 -0.883 -0.688 -0.865 -0.221 -0.561 -0.668 -0.433 -0.782 -0.196 -0.556 -0.877 -0.688 -0.931 -0.780 -0.854 -0.289 -0.866 -1.299 -0.648 0.000 -0.607 -0.757 -0.890 -0.677 0.052 -0.533 -1.109 0.003 -0.023 -0.834 -0.827 0.216 -0.125 -0.824 -0.957 -0.784 -0.351 -1.002 -0.689 -0.948 -0.964 -1.128 -0.632 -0.421 -1.259 -0.957 -0.685 -0.453 -0.799 -0.342 -0.192 0.018 -1.190 -0.936 -0.538 -0.164 -0.603 1.029 -0.191 -0.425 -0.887 -0.828 -0.520 -0.518 -0.724 -1.124 -0.528 -0.020 -0.978 -0.967 -0.656 -0.930 -0.238 -1.146 -0.911 -0.008 -0.630 -0.685 -0.707 -0.614 -0.227 -0.343 -0.521 -0.789 -0.967 -0.892 -0.466 -0.729 -1.032 -1.174 -0.437 -0.807 -1.091 -1.078 -0.634 -0.305 -0.934 -0.262 -0.723 -0.454 -0.653 -1.145 -0.858 -0.337 -0.469 -0.526 -0.372 -0.892 -0.771 -0.241 -0.733 -0.465 -0.653 -0.543 -0.844 -1.234 -0.001 1.608 -0.652 -0.906 -0.997 -0.518 -0.450 -0.750 -0.422 -0.562 -0.512 -0.497 -0.344 -0.362 -1.026 @@ -10002,7 +10002,7 @@ MSC 9242 8q13.3 4.552 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.6 MSC-AS1 100132891 8q13.3 4.256 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.517 0.040 0.460 0.894 2.327 2.624 0.002 1.585 -0.011 0.839 2.548 -0.004 0.137 0.021 0.073 2.539 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.140 0.025 0.024 1.637 0.000 1.564 0.377 2.772 2.082 0.726 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.125 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 3.418 1.827 1.816 1.350 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 -0.175 0.024 1.948 1.286 -0.565 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 -0.027 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.864 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.182 1.800 1.014 0.414 -0.034 1.435 1.250 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.022 0.513 1.656 0.981 1.407 1.309 0.843 0.415 0.593 0.524 1.151 0.881 1.998 0.536 TRPA1 8989 8q13.3 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.451 0.040 0.460 0.894 2.327 2.624 0.002 1.585 -0.011 0.839 2.538 -0.004 0.137 0.021 0.073 2.451 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.143 0.025 0.024 1.637 0.000 1.564 0.377 2.772 2.082 0.726 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.125 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 3.418 1.827 1.816 1.352 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 -0.175 0.024 2.016 1.302 -0.565 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 -0.027 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.885 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.211 1.800 1.014 0.414 -0.034 1.435 1.256 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.022 0.513 1.656 0.981 1.407 1.309 0.843 0.415 0.593 0.524 1.151 0.881 1.998 0.536 KCNB2 9312 8q13.3 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.497 0.040 0.460 0.894 2.327 2.624 0.002 1.585 -0.011 0.839 2.193 -0.004 0.137 0.021 0.073 1.161 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.261 0.025 0.024 1.637 0.000 1.564 0.377 2.772 2.082 0.726 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.327 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 3.418 1.827 1.816 1.419 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 0.151 0.024 2.745 1.661 -0.131 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 -0.027 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.894 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.224 1.800 1.014 0.414 -0.034 1.435 1.392 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.069 0.513 1.656 0.981 1.407 1.309 1.504 0.415 0.593 0.524 1.151 0.881 1.998 0.536 -LOC392232 392232 8q13.3 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.351 0.040 0.460 0.894 2.327 2.624 0.002 1.585 -0.011 0.839 2.311 -0.004 0.137 0.021 0.073 1.161 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.221 0.025 0.024 1.637 0.000 1.564 0.377 2.772 2.082 0.726 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.125 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 3.418 1.827 1.816 1.396 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 -0.175 0.024 2.512 1.661 -0.565 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 -0.027 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.894 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.224 1.800 1.014 0.414 -0.034 1.435 1.392 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.022 0.513 1.656 0.981 1.407 1.309 0.843 0.415 0.593 0.524 1.151 0.881 1.998 0.536 +TRPA2P 392232 8q13.3 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.351 0.040 0.460 0.894 2.327 2.624 0.002 1.585 -0.011 0.839 2.311 -0.004 0.137 0.021 0.073 1.161 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.221 0.025 0.024 1.637 0.000 1.564 0.377 2.772 2.082 0.726 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.125 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 3.418 1.827 1.816 1.396 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 -0.175 0.024 2.512 1.661 -0.565 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 -0.027 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.894 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.224 1.800 1.014 0.414 -0.034 1.435 1.392 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.022 0.513 1.656 0.981 1.407 1.309 0.843 0.415 0.593 0.524 1.151 0.881 1.998 0.536 TERF1 7013 8q21.11 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.788 0.040 0.460 0.894 2.327 2.624 0.002 1.585 -0.011 0.839 2.075 -0.004 0.137 0.021 0.073 1.161 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.301 0.025 0.024 1.637 0.000 1.564 0.377 2.772 2.530 0.726 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.731 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 3.617 1.827 1.816 1.442 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 0.476 0.024 2.977 1.661 0.303 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 -0.027 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.894 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.224 1.800 1.014 0.414 -0.034 1.435 1.392 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.161 0.513 1.656 0.981 1.407 1.309 2.165 0.415 0.593 0.524 1.151 0.881 1.998 0.536 C8orf84 157869 8q21.11 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.934 0.040 0.460 0.894 2.327 2.624 0.002 1.585 0.376 0.839 2.075 -0.004 0.137 0.021 0.073 1.161 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.301 0.025 0.024 1.637 0.000 1.564 0.377 2.772 3.575 0.746 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.933 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 4.080 1.827 1.816 1.442 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 0.476 0.024 2.977 1.661 0.303 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 0.309 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.894 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.224 1.800 1.014 0.414 -0.034 1.435 1.392 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.207 0.513 1.656 0.981 1.407 1.309 2.165 0.415 0.593 0.524 1.151 0.881 1.998 0.536 C8orf89 100130301 8q21.11 4.235 0.484 0.558 1.475 0.205 0.708 0.018 0.388 0.521 -0.024 0.934 0.040 0.460 0.894 2.327 2.624 0.002 1.585 1.151 0.839 2.075 -0.004 0.137 0.021 0.073 1.161 1.290 0.175 0.511 0.020 0.411 1.098 0.389 0.021 0.301 0.025 0.024 1.637 0.000 1.564 0.377 2.772 3.874 0.786 0.478 1.000 0.003 0.052 1.051 0.976 1.201 0.933 -0.015 1.853 0.722 0.296 2.398 1.523 0.769 1.872 0.857 1.272 4.212 1.827 1.816 1.442 0.087 1.695 0.376 0.100 2.556 1.757 0.870 0.015 -0.077 0.647 0.962 0.476 0.024 2.977 1.661 0.303 1.808 0.011 0.810 0.158 0.876 0.967 1.977 0.737 3.570 0.420 0.027 0.358 0.461 0.981 -0.073 0.728 0.185 0.185 0.386 0.472 0.030 1.947 0.302 0.894 -0.000 -0.373 -0.006 0.410 0.419 0.850 -0.244 0.630 0.013 1.253 1.593 0.718 0.124 0.590 -0.287 0.008 2.224 1.800 1.014 0.414 -0.034 1.435 1.392 0.777 0.754 0.304 2.646 0.666 -0.049 0.496 2.207 0.513 1.656 0.981 1.407 1.309 2.165 0.415 0.593 0.524 1.151 0.881 1.998 0.536 @@ -10889,7 +10889,7 @@ ZNF367 195828 9q22.32 0.010 0.190 0.620 -0.059 0.148 0.010 0.016 -0.025 0.024 0. 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0.005 0.548 0.104 -0.398 1.436 0.048 -0.159 0.508 0.042 0.272 -0.121 0.766 1.123 -0.012 0.759 -0.009 -0.003 -0.095 0.187 -0.407 0.001 -0.258 0.049 1.241 0.311 1.519 0.393 0.060 0.092 0.000 0.055 -0.014 0.222 -0.268 -0.025 -0.101 0.048 1.019 0.035 0.465 -0.170 0.148 0.442 0.022 0.995 0.030 -0.364 1.297 0.107 0.099 -0.003 0.165 0.070 0.007 0.209 1.533 0.834 -0.010 0.024 0.258 0.656 -0.048 -0.008 0.360 0.408 0.162 0.388 0.003 -0.151 0.539 -0.024 0.928 0.453 0.000 0.618 0.102 -0.174 0.336 0.029 0.045 0.027 0.025 0.007 0.180 0.128 1.567 0.069 -0.643 -0.046 0.110 0.754 -0.340 0.503 0.020 0.607 0.013 -0.278 -0.680 0.070 -0.494 0.020 -0.077 -0.055 0.651 -0.015 -0.003 1.306 0.482 0.499 0.115 0.854 0.292 0.130 0.034 -0.164 0.016 0.009 1.704 1.779 0.104 0.495 -0.282 0.000 0.029 -0.051 0.062 0.069 0.512 0.006 0.008 2.033 0.192 0.431 -0.004 -STRA13 201254 17q25.3 0.151 0.353 -0.400 1.151 -0.035 0.394 -0.051 0.351 0.280 -0.127 0.007 0.014 0.003 0.343 0.494 -0.025 0.005 0.548 0.104 -0.398 1.436 0.048 -0.159 0.508 0.042 0.272 -0.121 0.743 1.123 -0.012 0.759 -0.009 -0.003 -0.095 0.187 -0.407 0.001 -0.258 0.049 1.241 0.311 1.519 0.393 0.060 0.092 0.000 0.055 -0.014 0.222 -0.268 -0.025 -0.101 0.048 1.019 0.035 0.465 -0.170 0.148 0.442 0.022 0.995 0.030 -0.364 1.297 0.107 0.030 -0.003 0.165 0.070 0.007 0.209 1.533 0.834 -0.010 0.024 0.258 0.656 -0.048 -0.008 0.360 0.408 0.162 0.388 0.003 -0.151 0.539 -0.024 0.928 0.453 0.000 0.618 0.102 -0.174 0.336 0.029 0.045 0.027 0.025 0.007 0.180 0.128 1.567 0.069 -0.643 -0.046 0.110 0.754 -0.340 0.503 0.020 0.607 0.013 -0.278 -0.680 0.070 -0.494 0.020 -0.077 -0.055 0.639 -0.015 -0.003 1.306 0.482 0.499 0.115 0.854 0.292 0.130 0.023 -0.164 0.016 0.009 1.704 1.779 0.104 0.482 -0.282 0.000 0.029 -0.051 0.062 0.069 0.512 0.006 0.008 2.033 0.192 0.431 -0.004 +CENPX 201254 17q25.3 0.151 0.353 -0.400 1.151 -0.035 0.394 -0.051 0.351 0.280 -0.127 0.007 0.014 0.003 0.343 0.494 -0.025 0.005 0.548 0.104 -0.398 1.436 0.048 -0.159 0.508 0.042 0.272 -0.121 0.743 1.123 -0.012 0.759 -0.009 -0.003 -0.095 0.187 -0.407 0.001 -0.258 0.049 1.241 0.311 1.519 0.393 0.060 0.092 0.000 0.055 -0.014 0.222 -0.268 -0.025 -0.101 0.048 1.019 0.035 0.465 -0.170 0.148 0.442 0.022 0.995 0.030 -0.364 1.297 0.107 0.030 -0.003 0.165 0.070 0.007 0.209 1.533 0.834 -0.010 0.024 0.258 0.656 -0.048 -0.008 0.360 0.408 0.162 0.388 0.003 -0.151 0.539 -0.024 0.928 0.453 0.000 0.618 0.102 -0.174 0.336 0.029 0.045 0.027 0.025 0.007 0.180 0.128 1.567 0.069 -0.643 -0.046 0.110 0.754 -0.340 0.503 0.020 0.607 0.013 -0.278 -0.680 0.070 -0.494 0.020 -0.077 -0.055 0.639 -0.015 -0.003 1.306 0.482 0.499 0.115 0.854 0.292 0.130 0.023 -0.164 0.016 0.009 1.704 1.779 0.104 0.482 -0.282 0.000 0.029 -0.051 0.062 0.069 0.512 0.006 0.008 2.033 0.192 0.431 -0.004 RAC3 5881 17q25.3 0.151 0.353 -0.400 1.973 -0.035 0.394 -0.051 0.351 0.280 -0.127 0.007 0.014 0.003 0.343 0.494 -0.025 0.005 0.548 0.104 -0.398 1.436 0.048 -0.159 0.508 0.042 0.272 -0.121 1.170 1.123 -0.012 0.759 -0.009 -0.003 -0.095 0.187 -0.407 0.001 -0.258 0.049 1.241 0.311 1.519 0.393 0.060 0.092 0.000 0.055 -0.014 0.222 -0.268 -0.025 -0.101 0.048 1.019 0.035 0.465 -0.170 0.148 0.442 0.022 0.995 0.030 -0.364 1.297 0.107 0.106 -0.003 0.165 0.070 0.007 0.209 1.533 0.834 -0.010 0.024 0.258 0.656 -0.048 -0.008 0.360 0.408 0.162 0.388 0.003 -0.151 0.539 -0.024 0.928 0.453 0.000 0.618 0.102 -0.174 0.336 0.029 0.045 0.027 0.025 0.007 0.180 0.128 1.567 0.069 -0.507 -0.046 0.110 0.754 -0.340 0.503 0.020 0.607 0.013 -0.278 -0.680 0.070 -0.494 0.020 -0.077 -0.055 0.868 -0.015 -0.003 1.306 0.482 0.499 0.115 0.854 0.292 0.130 0.235 -0.164 0.016 0.009 1.704 1.779 0.104 0.722 -0.282 0.000 0.029 -0.051 0.062 0.069 0.512 0.006 0.008 2.033 0.192 0.431 -0.004 DCXR 51181 17q25.3 0.151 0.353 -0.400 1.973 -0.035 0.394 -0.051 0.351 0.280 -0.127 0.007 0.014 0.003 0.343 0.494 -0.025 0.005 0.548 0.104 -0.398 1.436 0.048 -0.159 0.508 0.042 0.272 -0.121 1.217 1.123 -0.012 0.759 -0.009 -0.003 -0.095 0.187 -0.407 0.001 -0.258 0.049 1.241 0.311 1.519 0.393 0.060 0.092 0.000 0.055 -0.014 0.222 -0.268 -0.025 -0.101 0.048 1.019 0.035 0.465 -0.170 0.148 0.442 0.022 0.995 0.030 -0.364 1.297 0.107 0.106 -0.003 0.165 0.070 0.007 0.209 1.533 0.834 -0.010 0.024 0.258 0.656 -0.048 -0.008 0.360 0.408 0.162 0.388 0.003 -0.151 0.539 -0.024 0.928 0.453 0.000 0.618 0.102 -0.174 0.336 0.029 0.045 0.027 0.025 0.007 0.180 0.128 1.567 0.069 -0.304 -0.046 0.110 0.754 -0.340 0.542 0.020 0.607 0.013 -0.278 -0.680 0.070 -0.494 0.020 -0.077 -0.055 0.894 -0.015 -0.003 1.306 0.482 0.499 0.115 0.854 0.292 0.130 0.259 -0.164 0.016 0.009 1.704 1.779 0.104 0.748 -0.282 0.000 0.029 -0.051 0.062 0.069 0.512 0.006 0.008 2.033 0.192 0.431 -0.004 RFNG 5986 17q25.3 0.151 0.353 -0.400 1.973 -0.035 0.394 -0.051 0.351 0.280 -0.127 0.007 0.014 0.003 0.343 0.494 -0.025 0.005 0.548 0.104 -0.398 1.436 0.048 -0.159 0.508 0.042 0.272 -0.121 1.217 1.123 -0.012 0.759 -0.009 -0.003 -0.095 0.187 -0.407 0.001 -0.258 0.049 1.241 0.311 1.519 0.393 0.060 0.092 0.000 0.055 -0.014 0.222 -0.268 -0.025 -0.101 0.048 1.019 0.035 0.465 -0.170 0.148 0.442 0.022 0.995 0.030 -0.364 1.297 0.107 0.106 -0.003 0.165 0.070 0.007 0.209 1.533 0.834 -0.010 0.024 0.258 0.656 -0.048 -0.008 0.360 0.408 0.162 0.388 0.003 -0.151 0.539 -0.024 0.928 0.453 0.000 0.618 0.102 -0.174 0.336 0.029 0.045 0.027 0.025 0.007 0.180 0.128 1.567 0.069 -0.541 -0.046 0.110 0.754 -0.340 0.559 0.020 0.607 0.013 -0.278 -0.115 0.070 -0.494 0.020 -0.077 -0.055 0.894 -0.015 -0.003 1.306 0.482 0.499 0.115 0.854 0.292 0.130 0.259 -0.164 0.016 0.009 1.704 1.779 0.104 0.748 -0.282 0.000 0.029 -0.051 0.062 0.069 0.512 0.006 0.008 2.033 0.192 0.431 -0.004 @@ -20080,7 +20080,7 @@ SH2D3A 10045 19p13.3 -0.051 -0.710 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.0 VAV1 7409 19p13.3 -0.051 -0.628 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.960 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 0.063 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 -0.216 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.075 -0.565 -0.189 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.585 -0.414 -0.655 -0.191 0.121 0.041 -0.041 -0.331 0.269 -0.066 -0.090 0.046 0.130 -0.060 0.033 0.202 -0.519 -0.261 0.045 -0.568 -0.034 -0.005 -0.084 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.048 -0.049 -0.026 -0.090 0.009 0.431 -0.571 -0.239 -0.331 -0.003 -0.063 -0.051 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 EMR1 2015 19p13.3 -0.051 -0.220 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.960 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 0.063 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 0.830 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.097 -0.565 -0.255 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.585 -0.264 -0.655 -0.191 0.121 0.028 -0.041 -0.331 0.269 -0.066 -0.121 0.046 0.130 -0.060 0.033 0.202 -0.514 -0.261 0.045 -0.269 -0.034 -0.005 -0.101 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.043 -0.049 -0.026 -0.090 0.009 0.431 -0.571 -0.239 -0.331 -0.003 -0.040 -0.073 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 EMR4P 326342 19p13.2 -0.051 -0.220 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.960 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 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-0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 0.063 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 0.830 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.097 -0.565 -0.255 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.585 -0.264 -0.655 -0.191 0.121 0.028 -0.041 -0.331 0.269 -0.066 -0.121 0.046 0.130 -0.060 0.033 0.202 -0.514 -0.261 0.045 -0.269 -0.034 -0.005 -0.101 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.043 -0.049 -0.026 -0.090 0.009 0.431 -0.571 -0.239 -0.331 -0.003 -0.040 -0.073 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 +MARK2P21 497049 19p13.2 -0.051 -0.220 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.960 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 0.063 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 0.830 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.097 -0.565 -0.255 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.585 -0.264 -0.655 -0.191 0.121 0.028 -0.041 -0.331 0.269 -0.066 -0.121 0.046 0.130 -0.060 0.033 0.202 -0.514 -0.261 0.045 -0.269 -0.034 -0.005 -0.101 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.043 -0.049 -0.026 -0.090 0.009 0.431 -0.571 -0.239 -0.331 -0.003 -0.040 -0.073 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 INSR 3643 19p13.2 -0.062 0.243 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.935 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 -0.013 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 2.070 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.097 -0.565 -0.328 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.552 -0.094 -0.655 -0.191 0.121 0.014 -0.041 -0.331 0.269 -0.066 -0.157 0.046 0.130 -0.060 0.033 0.202 -0.514 -0.261 0.045 0.070 -0.034 -0.005 -0.024 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.039 -0.049 -0.026 -0.090 0.009 0.431 -0.553 -0.239 -0.331 -0.003 -0.014 0.065 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 MBD3L2 125997 19p13.2 -0.051 -0.220 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.960 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 0.063 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 0.830 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.097 -0.565 -0.255 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.585 -0.264 -0.655 -0.191 0.121 0.028 -0.041 -0.331 0.269 -0.066 -0.121 0.046 0.130 -0.060 0.033 0.202 -0.514 -0.261 0.045 -0.269 -0.034 -0.005 -0.101 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.043 -0.049 -0.026 -0.090 0.009 0.431 -0.571 -0.239 -0.331 -0.003 -0.040 -0.073 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 MBD3L3 653657 19p13.2 -0.051 -0.220 -0.077 -0.047 -0.070 0.008 -0.033 -0.051 -0.006 -0.085 -0.960 -0.023 -0.026 -0.025 -0.694 -0.045 -0.007 -0.058 0.019 -0.405 -0.015 0.000 -0.156 -0.036 0.043 -0.005 0.210 -0.004 -0.033 0.379 -0.492 -0.041 0.000 0.032 0.220 0.143 -0.008 -0.320 0.806 -0.490 -0.086 0.063 0.079 -0.423 0.062 0.061 -0.317 -0.037 -0.413 0.013 -0.124 0.032 0.112 0.053 0.026 -0.103 -0.707 0.085 0.008 -0.922 -0.430 -0.274 0.830 -0.618 -0.024 -0.027 0.076 -0.205 -0.134 -0.084 -0.097 -0.565 -0.255 0.007 0.001 0.181 0.016 -0.001 -0.288 0.164 -0.799 0.447 0.000 0.021 -0.315 0.000 -0.026 0.000 1.776 -0.039 -0.854 -0.017 0.073 -0.291 0.038 0.585 -0.264 -0.655 -0.191 0.121 0.028 -0.041 -0.331 0.269 -0.066 -0.121 0.046 0.130 -0.060 0.033 0.202 -0.514 -0.261 0.045 -0.269 -0.034 -0.005 -0.101 0.000 -0.064 -0.011 0.002 -0.003 -0.018 -0.050 0.043 -0.049 -0.026 -0.090 0.009 0.431 -0.571 -0.239 -0.331 -0.003 -0.040 -0.073 0.028 -0.021 0.000 -0.083 -0.464 -0.272 -0.417 -0.024 0.039 0.012 -0.218 -0.413 -0.503 diff --git a/public/prad_su2c_2015/all_thresholded.by_genes.txt b/public/prad_su2c_2015/all_thresholded.by_genes.txt index 5399ac5095..6eb8cbb3fc 100644 --- a/public/prad_su2c_2015/all_thresholded.by_genes.txt +++ b/public/prad_su2c_2015/all_thresholded.by_genes.txt @@ -279,7 +279,7 @@ ESPNP 284729 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 MFAP2 4237 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 1 0 0 0 -1 0 1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 MIR3675 100500876 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 1 0 0 0 -1 0 1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 MST1P2 11209 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 1 0 0 0 -1 0 1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 -MST1P9 11223 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 1 0 0 0 -1 0 1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 +MST1L 11223 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 1 0 0 0 -1 0 1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 NBPF1 55672 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 1 0 0 0 -1 0 1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 SDHB 6390 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 -1 0 0 1 0 0 0 -1 0 0 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 0 0 -1 -1 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 1 0 0 0 1 -1 1 -1 0 0 0 -1 -1 0 1 0 PADI2 11240 1p36.13 -1 1 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 -1 0 0 1 0 0 0 -1 0 0 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 0 -2 0 0 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