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Community contribution - new Schwannomatosis study dataset from Synodos Project by Children's Tumor Foundation #2137

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anngvu opened this issue Feb 17, 2025 · 0 comments · May be fixed by #2138

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@anngvu
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anngvu commented Feb 17, 2025

This is data from Mansouri, S., Suppiah, S., Mamatjan, Y. et al. Epigenomic, genomic, and transcriptomic landscape of schwannomatosis. Acta Neuropathol (2020). https://doi.org/10.1007/s00401-020-02230-x that we decided to reprocess abd contribute publicly to cBioPortal in 2025.

(Following old checklist template)

  • create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
  • List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
  • Document the curation process, e.g. how and by whom the data was transformed
  • Follow checklist for a new study #248
  • Create a pull request to datahub once the data is curated
  • Push to triage portal
  • Import into msk and public portal database
  • Update the default quick select study list see options for selecting tcga + non-tcga studies cbioportal#5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
  • Update cBioPortal news
@anngvu anngvu linked a pull request Feb 17, 2025 that will close this issue
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