diff --git a/src/scripts/data/qtl_data/README.md b/src/scripts/data/qtl_data/README.md index 3a3589e..8831abf 100644 --- a/src/scripts/data/qtl_data/README.md +++ b/src/scripts/data/qtl_data/README.md @@ -1,9 +1,9 @@ ## QTL data processing -The scripts in this folder are used to extract fine-mapped causal sQTLs, paQTLs and ipaQTLs from the results of the eQTL eQTL Catalogue, as well as construct distance- and expression-matched negative SNPs.
-
+The scripts in this folder are used to extract fine-mapped causal sQTLs, paQTLs and ipaQTLs from the results of the eQTL Catalogue, as well as construct distance- and expression-matched negative SNPs.
+ *Notes*: -- The pipeline requires the GTEx v8 (median) TPM matrix, which can be downloaded [here](https://storage.googleapis.com/adult-gtex/bulk-gex/v8/rna-seq/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct.gz).
+- The pipeline requires the GTEx v8 (median) TPM matrix, which can be downloaded [here](https://storage.googleapis.com/adult-gtex/bulk-gex/v8/rna-seq/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct.gz).
As a prerequisite to generating any of the QTL datasets, run the following scripts (in order):